Publications

Ciregia F, Kollipara L, Giusti L, Zahedi RP, Giacomelli C, Mazzoni MR, Giannaccini G, Scarpellini P, Urbani A, Sickmann A, Lucacchini A, Bazzichi L.

Bottom-up proteomics suggests an association between differential expression of mitochondrial proteins and chronic fatigue syndrome

Translational Psychiatry, Vol. 6, Nr. 9, 2016, P. e904

Type: Journal article

DOI: /doi.org/10.1038/tp.2016.184

Brandt S, Schütz A, Klute D, Kratzer J, Franzke J.

Dielectric barrier discharges applied for optical spectrometry

Spectrochimica Acta Part B-Atomic Spectroscopy, Vol. 123, 2016, P. 6–32

Type: Journal article

DOI: /doi.org/10.1016/j.sab.2016.07.001

Antweiler N, Gatberg S, Jestel G, Franzke J, Agar DW.

Noninvasive Sensor for the Detection of Process Parameters for Multiphase Slug Flows in Microchannels

ACS Sensors, Vol. 1, Nr. 9, 2016, P. 1117–1123

Type: Journal article

DOI: /doi.org/10.1021/acssensors.6b00420

Kormunda M, Fischer D, Hertwig A, Beck U, Sebik M, Esser N.

Preparation of pulsed DC magnetron deposited Fe-doped SnO2 coatings

Physica Status Solidi (A) - Applications and Materials Science, Vol. 213, Nr. 9, 2016, P. 2303–2309

Type: Journal article

DOI: /doi.org/10.1002/pssa.201532882

Furchner A, Kratz C, Gkogkou D, Ketelsen H, Hinrichs K.

Infrared-spectroscopic single-shot laser mapping ellipsometry

Applied Surface Science, Vol. 421, 2016, P. 440–445

Type: Journal article

DOI: /doi.org/10.1016/j.apsusc.2016.08.140

Engel J, Becker C, Lategahn J, Keul M, Ketzer J, Mühlenberg T, Kollipara L, Schultz-Fademrecht C, Zahedi RP, Bauer S, Rauh D.

Insight into the Inhibition of Drug-Resistant Mutants of the Receptor Tyrosine Kinase EGFR

Angewandte Chemie (International ed. in English), Vol. 55, Nr. 36, 2016, P. 10909–10912

Type: Journal article

DOI: /doi.org/10.1002/anie.201605011

Solari F, Mattheij NJA, Burkhart JM, Swieringa F, Collins PW, Cosemans JMEM, Sickmann A, Heemskerk JWM, Zahedi RP.

Combined Quantification of the Global Proteome, Phosphoproteome, and Proteolytic Cleavage to Characterize Altered Platelet Functions in the Human Scott Syndrome

Molecular & Cellular Proteomics, Vol. 15, Nr. 10, 2016, P. 3154–3169

Type: Journal article

DOI: /doi.org/10.1074/mcp.M116.060368

Klute D, Schütz A, Michels A, Vadla C, Veza D, Horvatic V, Franzke J.

An experimental study on the influence of trace impurities on ionization of atmospheric noble gas dielectric barrier discharges

Analyst, Vol. 141, Nr. 20, 2016, P. 5842–5848

Type: Journal article

DOI: /doi.org/10.1039/c6an01352j

Speiser E, Esser N, Wippermann S, Schmidt WG.

Surface vibrational Raman modes of In:Si(111)(4x1) and (8x2) nanowires

Physical Review B, Vol. 94, Nr. 7, 2016, P. 75417

Type: Journal article

DOI: /doi.org/10.1103/PhysRevB.94.075417

Gavriljuk K, Schartner J, Seidel H, Dickhut C, Zahedi RP, Hedberg C, Kötting C, Gerwert K.

Unraveling the Phosphocholination Mechanism of the Legionella pneumophila Enzyme AnkX

Biochemistry, Vol. 55, Nr. 31, 2016, P. 4375–4385

Type: Journal article

DOI: /doi.org/10.1021/acs.biochem.6b00524

Brietz A, Schuch KV, Wangorsch G, Lorenz K, Dandekar T.

Analyzing ERK 1/2 signalling and targets

Molecular bioSystems, Vol. 12, Nr. 8, 2016, P. 2436–2446

Type: Journal article

DOI: /doi.org/10.1039/C6MB00255B

Lodrini M, Poschmann G, Schmidt V, Wünschel J, Dreidax D, Witt O, Höfer T, Meyer HE, Stühler K, Eggert A, Deubzer HE.

Minichromosome Maintenance Complex Is a Critical Node in the miR-183 Signaling Network of MYCN-Amplified Neuroblastoma Cells

Journal of Proteome Research, Vol. 15, Nr. 7, 2016, P. 2178–2186

Type: Journal article

DOI: /doi.org/10.1021/acs.jproteome.6b00134

Jeckelmann E, Sanna S, Schmidt WG, Speiser E, Esser N.

Grand canonical Peierls transition in In/Si(111)

Physical Review B, Vol. 93, Nr. 24, 2016, P. 241407

Type: Journal article

DOI: /doi.org/10.1103/PhysRevB.93.241407

Fernando RN, Chaudhari U, Escher SE, Hengstler JG, Hescheler J, Jennings P, Keun HC, Kleinjans JCS, Kolde R, Kollipara L, Kopp-Schneider A, Limonciel A, Nemade H, Nguemo F, Peterson H, Prieto P, Rodrigues RM, Sachinidis A, Schäfer C, Sickmann A, Spitkovsky D, Stöber R, van Breda SGJ, van de Water B, Vivier M, Zahedi RP, Vinken M, Rogiers V.

"Watching the Detectives" report of the general assembly of the EU project DETECTIVE Brussels, 24-25 November 2015

Archives of Toxicology, Vol. 90, Nr. 6, 2016, P. 1529–1539

Type: Journal article

DOI: /doi.org/10.1007/s00204-016-1719-6

Bauer J, Wehland M, Pietsch J, Sickmann A, Weber G, Grimm D.

Annotated Gene and Proteome Data Support Recognition of Interconnections Between the Results of Different Experiments in Space Research

Microgravity Science and Technology, Vol. 28, Nr. 3, 2016, P. 357–365

Type: Journal article

DOI: /doi.org/10.1007/s12217-015-9451-z

Neumann MD, Esser N, Chaveau JM, Goldhahn R, Feneberg M.

Inversion of absorption anisotropy and bowing of crystal field splitting in wurtzite MgZnO

Applied Physics Letters, Vol. 108, Nr. 22, 2016, P. 221105

Type: Journal article

DOI: /doi.org/10.1063/1.4953159

Buchkremer S, González Coraspe JA, Weis J, Roos A.

Sil1-Mutant Mice Elucidate Chaperone Function in Neurological Disorders

Journal of Neuromuscular Diseases, Vol. 3, Nr. 2, 2016, P. 169–181

Type: Journal article

DOI: /doi.org/10.3233/JND-160152

Schutz A, Klute D, Brandt S, Liedtke S, Jestel G, Franzke J.

Tuning Soft Ionization Strength for Organic Mass Spectrometry

Analytical Chemistry, Vol. 88, Nr. 10, 2016, P. 5538–5541

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.6b01131

Propping S, Lorenz K, Michel MC, Wirth MP, Ravens U.

β-Adrenoceptor-mediated Relaxation of Urinary Bladder Muscle in β2-Adrenoceptor Knockout Mice

Frontiers in Pharmacology, Vol. 7, 2016, P. 118

Type: Journal article

DOI: /doi.org/10.3389/fphar.2016.00118

Klute D, Michels A, Schütz A, Vadla C, Horvatic V, Franzke J.

Capillary Dielectric Barrier Discharge

Analytical Chemistry, Vol. 88, Nr. 9, 2016, P. 4701–4705

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.5b04605

Liedtke S, Ahlmann N, Marggraf U, Schütz A, Vautz W, Franzke J.

Medium Vacuum Electron Emitter as Soft Atmospheric Pressure Chemical Ionization Source for Organic Molecules

Analytical Chemistry, Vol. 88, Nr. 9, 2016, P. 5003–5008

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.6b01164

Schommartz T, Loroch S, Alawi M, Grundhoff A, Sickmann A, Brune W.

Functional Dissection of an Alternatively Spliced Herpesvirus Gene by Splice Site Mutagenesis

Journal of Virology, Vol. 90, Nr. 9, 2016, P. 4626–4636

Type: Journal article

DOI: /doi.org/10.1128/JVI.02987-15

Broering R, Trippler M, Werner M, Real CI, Megger DA, Bracht T, Schweinsberg V, Sitek B, Eisenacher M, Meyer HE, Baba HA, Weber F, Hoffmann AC, Gerken G, Schlaak JF.

Hepatic expression of proteasome subunit alpha type-6 is upregulated during viral hepatitis and putatively regulates the expression of ISG15 ubiquitin-like modifier, a proviral host gene in hepatitis C virus infection

Journal of Viral Hepatitis, Vol. 23, Nr. 5, 2016, P. 375–386

Type: Journal article

DOI: /doi.org/10.1111/jvh.12508

Huang MD, Fuss H, Lademann J, Florek S, Patzelt A, Meinke MC, Jung S.

Detection of capecitabine (Xeloda®) on the skin surface after oral administration

Journal of Biomedical Optics, Vol. 21, Nr. 4, 2016, P. 47002

Type: Journal article

DOI: /doi.org/10.1117/1.JBO.21.4.047002

Brambach BC, Michels A, Kettler R, Franzke J.

Charge dependent electroporation of Escherichia coli C600

Journal of Electroanalytical Chemistry, Vol. 767, 2016, P. 108–113

Type: Journal article

DOI: /doi.org/10.1016/j.jelechem.2016.02.007

Schrötter A, Park YM, Marcus K, Martins-de-Souza D, Nilsson P, Magraoui FE, Meyer HE, Grinberg LT.

Key players in neurodegenerative disorders in focus-New insights into the proteomic profile of Alzheimer's disease, schizophrenia, ALS, and multiple sclerosis-24th HUPO BPP Workshop

Proteomics, Vol. 16, Nr. 7, 2016, P. 1047–1050

Type: Journal article

DOI: /doi.org/10.1002/pmic.201600047

Fíla J, Radau S, Matros A, Hartmann A, Scholz U, Feciková J, Mock HP, Čapková V, Zahedi RP, Honys D.

Phosphoproteomics Profiling of Tobacco Mature Pollen and Pollen Activated in vitro

Molecular & Cellular Proteomics, Vol. 15, Nr. 4, 2016, P. 1338–1350

Type: Journal article

DOI: /doi.org/10.1074/mcp.M115.051672

Coman C, Solari F, Hentschel A, Zahedi P. R, Sickmann A, Ahrends R.

Simultaneous Metabolite, Protein, Lipid Extraction (SIMPLEX)

Molecular & Cellular Proteomics, Vol. 15, Nr. 4, 2016, P. 1453–1466

Type: Journal article

DOI: /doi.org/10.1074/mcp.M115.053702

Mölleken C, Poschmann G, Bonella F, Costabel U, Sitek B, Stühler K, Meyer HE, Schmiegel WH, Marcussen N, Helmer M, Nielsen O, Hansen S, Schlosser A, Holmskov U, Sorensen GL.

MFAP4

Sarcoidosis Vasculitis and Diffuse Lung Diseases, Vol. 33, Nr. 1, 2016, P. 41–50

Type: Journal article

McReynolds AC, Karra AS, Li Y, Lopez ED, Turjanski AG, Dioum E, Lorenz K, Zaganjor E, Stippec S, McGlynn K, Earnest S, Cobb MH.

Phosphorylation or Mutation of the ERK2 Activation Loop Alters Oligonucleotide Binding

Biochemistry, Vol. 55, Nr. 12, 2016, P. 1909–1917

Type: Journal article

DOI: /doi.org/10.1021/acs.biochem.6b00096

de Oliva Novo PJ, Dell'Aica M, Janasek D, Zahedi RP.

High spatial and temporal resolution cell manipulation techniques in microchannels

Analyst, Vol. 141, Nr. 6, 2016, P. 1888–1905

Type: Journal article

DOI: /doi.org/10.1039/C6AN00027D

Rösicke F, Sun G, Neubert T, Janietz S, Hinrichs K, Rappich J.

Electrochemical functionalization of Au by aminobenzene and 2-aminotoluene

Journal of Physics - Condensed Matter, Vol. 28, Nr. 9, 2016, P. 094004

Type: Journal article

DOI: /doi.org/10.1088/0953-8984/28/9/094004

Kollipara L, Buchkremer S, Weis J, Brauers E, Hoss M, Rütten S, Caviedes P, Zahedi RP, Roos A.

Proteome Profiling and Ultrastructural Characterization of the Human RCMH Cell Line

Journal of Proteome Research, Vol. 15, Nr. 3, 2016, P. 945–955

Type: Journal article

DOI: /doi.org/10.1021/acs.jproteome.5b00972

Cai H, Degliangeli F, Palitzsch B, Gerlitzki B, Kunz H, Schmitt E, Fiammengo R, Westerlind U.

Glycopeptide-functionalized gold nanoparticles for antibody induction against the tumor associated mucin-1 glycoprotein

Bioorganic & Medicinal Chemistry, Vol. 24, Nr. 5, 2016, P. 1132–1135

Type: Journal article

DOI: /doi.org/10.1016/j.bmc.2016.01.044

Wolf EV, Verhelst SHL.

Inhibitors of rhomboid proteases

Biochimie, Vol. 122, Nr. 3, 2016, P. 38–47

Type: Journal article

DOI: /doi.org/10.1016/j.biochi.2015.07.007

Gkogkou D, Schreiber B, Shaykhutdinov T, Khoa Ly H, Kuhlmann U, Gernert U, Facsko S, Hildebrandt P, Esser N, Hinrichs K, Weidinger IM, Oates TWH.

Polarization- and wavelength-dependent surface-enhanced Raman spectroscopy using optically anisotropic rippled substrates for sensing

ACS Sensors, Vol. 1, Nr. 3, 2016, P. 318–323

Type: Journal article

DOI: /doi.org/10.1021/acssensors.5b00176

Kroning A, Furchner A, Adam S, Uhlmann P, Hinrichs K.

Probing carbonyl-water hydrogen-bond interactions in thin polyoxazoline brushes

Biointerphases, Vol. 11, Nr. 1, 2016, P. 019005

Type: Journal article

DOI: /doi.org/10.1116/1.4939249

Hentschel A, Zahedi RP, Ahrends R.

Protein lipid modifications--More than just a greasy ballast

Proteomics, Vol. 16, Nr. 5, 2016, P. 759–782

Type: Journal article

DOI: /doi.org/10.1002/pmic.201500353

Hafner D, Ziegler L, Ichwan M, Zhang T, Schneider M, Schiffmann M, Thomas C, Hinrichs K, Jordan R, Amin I.

Mussel-Inspired Polymer Carpets

Advanced Materials, Vol. 28, Nr. 7, 2016, P. 1489–1494

Type: Journal article

DOI: /doi.org/10.1002/adma.201504033

Zabel R, Weber G.

Comparative study of the oxidation behavior of sulfur-containing amino acids and glutathione by electrochemistry-mass spectrometry in the presence and absence of cisplatin

Analytical and Bioanalytical Chemistry, Vol. 408, Nr. 4, 2016, P. 1237–1247

Type: Journal article

DOI: /doi.org/10.1007/s00216-015-9233-x

Yang Y, Fonovic M, Verhelst SHL.

Cleavable linkers in chemical proteomics applications

Springer New York, Vol. 1491, 2016, P. 255–266

Book series: Methods in molecular biology

Type: Book contribution

DOI: /doi.org/10.1007/978-1-4939-6439-0_14

Ayankojo AG, Tretjakov A, Reut J, Boroznjak R, Öpik A, Rappich J, Furchner A, Hinrichs K, Syritski V.

Molecularly Imprinted Polymer Integrated with a Surface Acoustic Wave Technique for Detection of Sulfamethizole

Analytical Chemistry, Vol. 88, Nr. 2, 2016, P. 1476–1484

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.5b04735

Yu J, Schorlemer M, Gomez Toledo A, Pett C, Sihlbom C, Larson G, Westerlind U, Nilsson J.

Distinctive MS/MS Fragmentation Pathways of Glycopeptide-Generated Oxonium Ions Provide Evidence of the Glycan Structure

Chemistry-A European Journal, Vol. 22, Nr. 3, 2016, P. 1114–1124

Type: Journal article

DOI: /doi.org/10.1002/chem.201503659

von Bohlen A.

Some Philosophical Aspects of Analytical Chemistry

John Wiley and Sons, 2016, P. 1–16

Book series: Encyclopedia of Analytical Chemistry

Type: Book contribution

Ahrends R, Niewiadomski P, Teruel MN, Rohatgi R.

Measuring Gli2 Phosphorylation by Selected Reaction Monitoring Mass Spectrometry

Springer, 2016, P. 105–123

Book series: Hedgehog Signaling Protocols

Type: Book contribution

ISBN: 78-1-4939-2771-5

Lefebvre-Legendre L, Reifschneider O, Kollipara L, Sickmann A, Wolters D, Kück U, Goldschmidt-Clermont M.

A pioneer protein is part of a large complex involved in trans-splicing of a group II intron in the chloroplast of Chlamydomonas reinhardtii

Plant Journal, Vol. 85, Nr. 1, 2016, P. 57–69

Type: Journal article

DOI: /doi.org/10.1111/tpj.13089

Peng B, Ahrends R.

Adaptation of Skyline for Targeted Lipidomics

Journal of Proteome Research, Vol. 15, Nr. 1, 2016, P. 291–301

Type: Journal article

DOI: /doi.org/10.1021/acs.jproteome.5b00841

Sidorenko I, Nizamov S, Hergenröder R, Zybin A, Kuzmichev A, Kiwull B, Niessner R, Mirsky V.

Computer assisted detection and quantification of single adsorbing nanoparticles by differential surface plasmon microscopy

Microchimica Acta, Vol. 183, Nr. 1, 2016, P. 101–109

Type: Journal article

DOI: /doi.org/10.1007/s00604-015-1599-0

Verdoes M, Verhelst SHL.

Detection of protease activity in cells and animals

Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, Vol. 1864, Nr. 1, 2016, P. 130–142

Type: Journal article

DOI: /doi.org/10.1016/j.bbapap.2015.04.029

Huang MD, Becker-Ross H, Okruss M, Geisler S, Florek S.

Determination of phosphorus using high-resolution diphosphorus molecular absorption spectra produced in the graphite furnace

Spectrochimica Acta Part B-Atomic Spectroscopy, Vol. 115, Nr. 1, 2016, P. 23–30

Type: Journal article

DOI: /doi.org/10.1016/j.sab.2015.10.007