Publications

Ebersbach P, Münchberg U, Freier E.

SERS Background Imaging – a Versatile Tool Towards More Reliable SERS Analytics

ChemRxiv, 2020

Type: Journal article

DOI: /doi.org/10.26434/chemrxiv.12589013

Kopczynski D, Hoffmann N, Peng B, Ahrends R.

Goslin - A Grammar of Succinct Lipid Nomenclature

Analytical Chemistry, 2020

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.0c01690

Kratz C, Furchner A, Sun G, Rappich J, Hinrichs K.

Sensing and structure analysis by in situ IR spectroscopy: From mL flow cells to microfluidic applications

Journal of Physics - Condensed Matter, 2020

Type: Journal article

DOI: /doi.org/https://iopscience.iop.org/article/10.1088/1361-648X/ab8523

Scheller I, Stritt S, Beck S, Peng B, Pleines I, Heinze KG, Braun A, Otto O, Ahrends R, Sickmann A, Bender M, Nieswandt B.

Coactosin-like 1 integrates signaling critical for shear-dependent thrombus formation in mouse platelets

Haematologica, Vol. 105, Nr. 6, 2020, P. 1667–1676

Type: Journal article

DOI: /doi.org/10.3324/haematol.2019.225516

Shpacovitch V, Hergenröder R.

Surface Plasmon Resonance (SPR)-Based Biosensors as Instruments with High Versatility and Sensitivity

Sensors, Vol. 20, Nr. 11, 2020

Type: Journal article

DOI: /doi.org/10.3390/s20113010

Knorrscheidt A, Püllmann P, Schell E, Homann D, Freier E, Weissenborn MJ.

Identification of novel unspecific peroxygenase chimeras and unusual YfeX axial heme ligand by a versatile high-throughput GC-MS approach

ChemCatChem, Vol. n/a, Nr. n/a, 2020

Type: Journal article

DOI: /doi.org/10.1002/cctc.202000618

Hinrichs K, Rappich J, Shaykhutdinov T.

Cover Picture: Field Manipulation of Infrared Absorption Properties

Physica Status Solidi B-Basic Solid State Physics, Vol. 2020, Nr. 257, 2070022, 2020

Type: Journal article

DOI: /doi.org/10.1002/pssb.202070022

Hinrichs K, Rappich J, Shaykhutdinov T.

Field manipulation of infrared absorption properties in thin films

Physica Status Solidi (b), Vol. 5, Nr. 257, 2020

Type: Journal article

DOI: /doi.org/10.1002/pssb.201900490

Gajdošik Šrajer M, Andjelković U, Gašo-Sokač D, Pavlović H, Shevchuk O, Martinović T, Clifton J, Begić M, Josić D.

Proteomic analysis of pyridoxal oxime derivatives treated Listeria monocytogenes reveals down-regulation of the main virulence factor, Listeriolysin O

Food Research International, Vol. 131, 2020

Type: Journal article

DOI: /doi.org/10.1016/j.foodres.2019.108951

Peng B, Kopczynski D, Pratt B, Ejsing C, Burla B, Hermansson M, Benke PI, Tan SH, Chan MY, Torta F, Schwudke D, Meckelmann S, Coman C, Schmitz O, MacLean B, Manke M, Borst O, R. Wenk M, Hoffmann N, Ahrends R.

LipidCreator: A workbench to probe the lipidomic landscape

Nature Communications, Vol. 11, Nr. 1, 2020, P. 2057

Type: Journal article

DOI: /doi.org/10.1038/s41467-020-15960-z

Jender M, Novo P, Mähler D, Münchberg U, Janasek D, Freier E.

Multiplexed Online-Monitoring of Microfluidic Free-Flow Electrophoresis via Mass Spectrometry

Analytical Chemistry, Vol. 92, Nr. 9, 2020, P. 6764–6769

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.0c00996

Hinrichs K, Kratz C, Furchner A.

Hyperspectral mid-infrared ellipsometric measurements in the twinkling of an eye

Spectroscopy Europe, Vol. 2020, Nr. 32 (2), 2020, P. 10–14

Type: Journal article

DOI: /doi.org/https://www.spectroscopyeurope.com/article/hyperspectral-mid-infrared-ellipsometric-measurements-twinkling-eye

Tomasovic A, Brand T, Schanbacher C, Kramer S, Hümmert MW, Godoy P, Schmidt-Heck W, Nordbeck P, Ludwig J, Homann S, Wiegering A, Shaykhutdinov T, Kratz C, Knüchel R, Müller-Hermelink HK, Rosenwald A, Frey N, Eichler J, Dobrev D, El-Armouche A, Hengstler JG, Müller OJ, Hinrichs K, Cuello F, Zernecke A, Lorenz K.

Interference with ERK-dimerization at the nucleocytosolic interface targets pathological ERK1/2 signaling without cardiotoxic side-effects

Nature Communications, Vol. 11, Nr. 1, 2020

Type: Journal article

DOI: /doi.org/10.1038/s41467-020-15505-4

Braun C, Neufeld , Gerstmann U, Sanna S, Plaickner J, Speiser E, Esser N, Schmidt WG.

Vibration Driven Self-Doping of Dangling-Bond Wires on Si(553)-Au Surfaces

Physical Review Letters, Vol. 2020, Nr. 124, 2020

Type: Journal article

DOI: /doi.org/10.1103/PhysRevLett.124.146802

Makepeace K, Mohammed Y, Rudashevskaya E, Petrotchenko E, Vögtle FN, Meisinger C, Sickmann A, Borchers C.

Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker

Molecular & Cellular Proteomics, Vol. 19, Nr. 4, 2020, P. 624–639

Type: Journal article

DOI: /doi.org/doi.org/10.1074/mcp.RA119.001839

von Bohlen A, Fernández-Ruiz R.

Experimental evidence of matrix effects in total-reflection X-ray fluorescence analysis: Coke case

Talanta, Vol. 209, Nr. 209, 2020

Type: Journal article

DOI: /doi.org/10.1016/j.talanta.2019.120562

Töpf A, Oktay Y, Balaraju S, Yilmaz E, Sonmezler E, Yis U, Laurie S, Thompson R, Roos A, MacArthur DG, Yaramis A, Gungor S, Lochmüller H, Hiz S, Horvath R.

Severe neurodevelopmental disease caused by a homozygous TLK2 variant

European journal of human genetics, Vol. 28, Nr. 3, 2020, P. 383–387

Type: Journal article

DOI: /doi.org/10.1038/s41431-019-0519-x

Plaickner J, Esser N, Halbig B, Geurts J, Schmidt WG, Sanna S.

Vibrational Raman spectroscopy on adsorbate-induced low-dimensional surface structures

Surface Science Reports, Vol. 75, Nr. 1, 2020

Type: Journal article

DOI: /doi.org/10.1016/j.surfrep.2020.100480

Camparini L, Kollipara L, Sinagra G, Loffredo FS, Sickmann A, Shevchuk O.

Targeted Approach to Distinguish and Determine Absolute Levels of GDF8 and GDF11 in Mouse Serum

Proteomics, 2020, P. e1900104

Type: Journal article

DOI: /doi.org/10.1002/pmic.201900104

Amich J, Mokhtari Z, Strobel M, Vialetto E, Sheta D, Yu Y, Hartweg J, Kalleda N, Jarick KJ, Brede C, Jordán-Garrote AL, Thusek S, Schmiedgen K, Arslan B, Pinnecker J, Thornton CR, Gunzer M, Krappmann S, Einsele H, Heinze KG, Beilhack A.

Three-Dimensional Light Sheet Fluorescence Microscopy of Lungs To Dissect Local Host Immune-Aspergillus fumigatus interactions

mBio, Vol. 11, Nr. 1, 2020, P. e02752–19

Type: Journal article

DOI: /doi.org/10.1128/mBio.02752-19

Knodel A, Marggraf U, Ahlmann N, Brandt S, Foest D, Gilbert López B, Franzke J.

Standardization of Sandwich-Structured Cu–Glass Substrates Embedded in a Flexible Diode Laser–Plasma Interface for the Detection of Cholesterol

Analytical Chemistry, 2020

Type: Journal article

Jender M, Novo P, Mähler D, Münchberg U, Janasek D, Freier E.

Multiplexed Online-Monitoring of Microfluidic Free-Flow Electrophoresis via Mass Spectrometry

ChemRxiv, 2020

Type: Journal article

DOI: /doi.org/10.26434/chemrxiv.11848422.v1

Li H, Münchberg U, Oughli AA, Buesen D, Lubitz W, Freier E, Plumeré N.

Suppressing hydrogen peroxide generation to achieve oxygen-insensitivity of a [NiFe] hydrogenase in redox active films

Nature Communications, Vol. 11, Nr. 1, 2020

Type: Journal article

DOI: /doi.org/10.1038/s41467-020-14673-7

Plaickner J, Speiser E, Chandola S, Esser N, Singh DK.

Adsorption of toluene-3,4-dithiol on silver islands investigated by surface-enhanced Raman spectroscopy

Journal of Raman Spectroscopy, 2020

Type: Journal article

Asheghali D, Lee SJ, Furchner A, Gruzd A, Larson S, Tokarev A, Stake S, Zhou X, Hinrichs K, Zhang LG, Minko S.

Enhanced neuronal differentiation of neural stem cells with mechanically enhanced touch-spun nanofibrous scaffolds

Nanomedicine: Nanotechnology, Biology and Medicine, Vol. 24, 2020

Type: Journal article

DOI: /doi.org/10.1016/j.nano.2020.102152

Märker R, Blank-Landeshammer B, Beier-Rosberger A, Sickmann A, Kück U.

Phosphoproteomic analysis of STRIPAK mutants identifies a conserved serine phosphorylation site in PAK kinase CLA4 to be important in fungal sexual development and polarized growth

Molecular Microbiology, Vol. 113, Nr. 6, 2020, P. 1053–1069

Type: Journal article

DOI: /doi.org/doi: 10.1111/mmi.14475

Vautz W.

Die Ionenmobilitätsspektrometrie – eine immer noch unterschätzte analytische Technik

GIT Labor-Fachzeitschrift, 2020

Type: Journal article

Kopczynski D, Hoffmann N, Peng B, Ahrends R.

Goslin - A Grammar of Succinct Lipid Nomenclature

Cold Spring Harbor Laboratory Press, 2020

Book series: BioRxiv

Type: Book contribution

DOI: /doi.org/10.1101/2020.04.17.046656

Hoffmann N, Kopczynski D, Al Machot F, Miranda Ackermann J, Sickmann A, Schwudke D, Shevchenko A, Ahrends R.

Lipidomik: wie Lipide die Blutgerinnung steuern

2020

Book series: de.NBI Use Case Broschüre 2020

Type: Book contribution

Furchner A, Kratz C, Ogieglo W, Pinnau I, Rappich J, Hinrichs K.

Ultrasensitive broadband infrared 4 × 4 Mueller-matrix ellipsometry for studies of depolarizing and anisotropic thin films

Journal of Vacuum Science & Technology B, Vol. 38, Nr. 1, 2020, P. 014003

Type: Journal article

DOI: /doi.org/10.1116/1.5129800

Vautz W, Seifert L, Mohammadi M, Klinkenberg I, Liedtke S.

Detection of axillary perspiration metabolites using ion mobility spectrometry coupled to rapid gas-chromatography

Analytical and Bioanalytical Chemistry, 2019, P. 1–10

Type: Journal article

Knorrscheidt A, Püllmann P, Schell E, Homann D, Freier E, Weissenborn M.

Development of 96 Multiple Injection-GC-MS Technique and Its Application in Protein Engineering of Natural and Non-Natural Enzymatic Reactions

ChemRxiv, 2019

Type: Journal article

DOI: /doi.org/10.26434/chemrxiv.10314239.v1

Maimari T, Krasel C, Bünemann M, Lorenz K.

The N-termini of GRK2 and GRK3 simulate the stimulating effects of RKIP on β-adrenoceptors

Biochemical and Biophysical Research Communications, Vol. 520, Nr. 2, 2019, P. 327–332

Type: Journal article

DOI: /doi.org/10.1016/j.bbrc.2019.09.135

Weingärtner O, Lütjohann D, Meyer S, Fuhrmann A, Cremers B, Seiler-Mußler S, Schött HF, Kerksiek A, Friedrichs S, Ulbricht U, Zawada AM, Laufs U, Schulze PC, Scheller B, Fliser D, Böhm M, Sijbrands E, Heine GH.

Low serum lathosterol levels associate with fatal cardiovascular disease and excess all-cause mortality:

Clinical research in Cardiology, Vol. 108, Nr. 12, 2019, P. 1381–1385

Type: Journal article

DOI: /doi.org/10.1007/s00392-019-01474-2

Blank-Landeshammer B, Richard VR, Mitsa G, Marques M, LeBlanc A, Kollipara L, Feldmann I, Couetoux du Tertre M, Gambaro K, McNamara S, Spatz A, Zahedi RP, Sickmann A, Batist G, Borchers C.

Proteogenomics of Colorectal Cancer Liver Metastases

Cancers, Vol. 11, Nr. 12, 2019

Type: Journal article

DOI: /doi.org/10.3390/cancers11121907

Reinders Y, Pohl F, Ahrens N, Prantl L, Kühlmann B, Haubner F.

Impact of platelet-rich plasma on cell migration processes after external radiation.

Clinical Hemorheology and Microcirculation, Vol. 73, Nr. 1, 2019, P. 43–51

Type: Journal article

DOI: /doi.org/10.3233/CH-199218

Wibberg D, Batut B, Belmann P, Blom J, Glöckner FO, Hoffmann N, Grüning B, Kleinbölting N, Rahn R, Rey M, Scholz U, Sharan M, Tauch A, Trojahn U, Usadel B, Kohlbacher O.

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR

F1000 Research, 2019, P. 1877

Type: Journal article

DOI: /doi.org/10.12688/f1000research.20244.1

Hinrichs K, Shaykhutdinov T, Kratz C, Furchner A.

Brilliant mid-infrared ellipsometry and polarimetry of thin films: Toward laboratory applications with laser based techniques

Journal of Vacuum Science & Technology B, Vol. 37, Nr. 37, 060801, 2019, P. 060801

Type: Journal article

DOI: /doi.org/https://avs.scitation.org/doi/10.1116/1.5122869

Greda K, Burhenn S, Pohl P, Franzke J.

Enhancement of emission from indium in flowing liquid anode atmospheric pressure glow discharge using organic media

Talanta, Vol. 2019, Nr. 204, 2019, P. 304–309

Type: Journal article

DOI: /doi.org/10.1016/j.talanta.2019.06.015

Drees C, Vautz W, Liedtke S, Rosin C, Althoff K, Lippmann M, Zimmermann S, Legler T, Yildiz D, Perl T, Kunze-Szikszay N.

GC-IMS headspace analyses allow early recognition of bacterial growth and rapid pathogen differentiation in standard blood cultures

Applied Microbiology and Biotechnology, Vol. 103, Nr. 21-22, 2019, P. 9091–9101

Type: Journal article

DOI: /doi.org/10.1007/s00253-019-10181-x

Vautz W, Hariharan C, Kayser O.

Fast Detection of Recent Cannabis sativa L. Consumption in Exhaled Breath using a Mobile Ion Mobility Spectrometer

Journal for Forensic Research and Crime Science, Vol. 2019, Nr. 3, 2019, P. 1–11

Type: Journal article

DOI: /doi.org/10.17303/jfrcs.2019.3.102

Blank-Landeshammer B, Teichert I, Märker R, Nowrousian M, Kück U, Sickmann A.

Combination of Proteogenomics with Peptide De Novo Sequencing Identifies New Genes and Hidden Posttranscriptional Modifications

mBio, Vol. 10, Nr. 5, 2019

Type: Journal article

DOI: /doi.org/10.1128/mBio.02367-19

Hoffmann N, Hartler J, Ahrends R.

JmzTab-M - A reference parser, writer and validator for the PSI mzTab 2.0 metabolomics standard

Analytical Chemistry, Vol. 91, Nr. 20, 2019, P. 12615–12618

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.9b01987

Lategahn J, Keul M, Kloevekorn P, Tumbrink HL, Niggenaber J, Mueller MP, Hodson L, Flasshoff M, Hardick J, Grabe T, Engel J, Schultz-Fademrecht C, Baumann M, Ketzer J, Muehlenberg T, Hiller W, Guenther G, Unger A, Mueller H, Heimsoeth A, Golz C, Blank-Landeshammer B, Kollipara L, Zahedi RP, Strohmann C, Hengstler JG, van Otterlo WAL, Bauer S, Rauh D.

Inhibition of osimertinib-resistant epidermal growth factor receptor EGFR-T790M/C797S

Chemical Science, Vol. 10, Nr. 46, 2019, P. 10789–10801

Type: Journal article

DOI: /doi.org/10.1039/c9sc03445e

Jochmann S, Elkenani M, Mohamed BA, Buchholz E, Lbik D, Binder L, Lorenz K, Shah AM, Hasenfuß G, Toischer K, Schnelle M.

Assessing the role of extracellular signal-regulated kinases 1 and 2 in volume overload-induced cardiac remodelling

ESC heart failure, Vol. 6, Nr. 5, 2019, P. 1015–1026

Type: Journal article

DOI: /doi.org/10.1002/ehf2.12497

Furchner A, Kratz C, Rappich J, Hinrichs K.

Hyperspectral Infrared Laser Polarimetry for Single-Shot Phase–Amplitude Imaging of Thin Films

Optics Letters, Vol. 44, Nr. 19, 2019, P. 4893–4896

Type: Journal article

DOI: /doi.org/10.1364/OL.44.004893

Stanstrup J, Broeckling CD, Helmus R, Hoffmann N, Mathé E, Naake T, Nicolotti L, Peters K, Rainer J, Salek R, Schulze T, Schymanski E, Stravs MA, Thevenot E, Treutler H, Weber RJM, Willighagen E, Witting M, Neumann S.

The metaRbolomics toolbox in Bioconductor and beyond

Metabolites, Vol. 9, Nr. 10, 2019

Type: Journal article

DOI: /doi.org/10.3390/metabo9100200

Yayla M, Toma A, Chen KH, Lenssen JE, Shpacovitch V, Hergenröder R, Weichert F, Chen JJ.

Nanoparticle Classification Using Frequency Domain Analysis on Resource-Limited Platforms

Sensors, Vol. 19, Nr. 19, 2019

Type: Journal article

DOI: /doi.org/10.3390/s19194138

Maximchik P, Tamarov K, Sheval E, Tolstik E, Kirchberger-Tolstik T, Yang Z, Sivakov V, Zhivotovsky B, Osminkina LA.

Biodegradable Porous Silicon Nanocontainers as an Effective Drug Carrier for Regulation of the Tumor Cell Death Pathways

Acs biomaterials science & engineering, Vol. 5, Nr. 11, 2019, P. 6063–6071

Type: Journal article

DOI: /doi.org/10.1021/acsbiomaterials.9b01292

Gkogkou D, Shaykhutdinov T, Kratz C, Oates T, Hildebrandt P, Weidinger IM, Khoa Ly H, Esser N, Hinrichs K.

Gradient metal nanoislands as a unified surface enhanced Raman scattering and surface enhanced infrared absorption platform for analytics

Analyst, Vol. 144, Nr. 17, 2019, P. 5271–5276

Type: Journal article

DOI: /doi.org/10.1039/c9an00839j