Publications

Vautz W, Seifert L, Mohammadi M, Klinkenberg I, Liedtke S.

Detection of axillary perspiration metabolites using ion mobility spectrometry coupled to rapid gas-chromatography

Analytical and Bioanalytical Chemistry, 2019, P. 1–10

Type: Journal article

Knorrscheidt A, Püllmann P, Schell E, Homann D, Freier E, Weissenborn M.

Development of 96 Multiple Injection-GC-MS Technique and Its Application in Protein Engineering of Natural and Non-Natural Enzymatic Reactions

ChemRxiv, 2019

Type: Journal article

DOI: /doi.org/10.26434/chemrxiv.10314239.v1

Blank-Landeshammer B, Richard VR, Mitsa G, Marques M, LeBlanc A, Kollipara L, Feldmann I, Couetoux du Tertre M, Gambaro K, McNamara S, Spatz A, Zahedi RP, Sickmann A, Batist G, Borchers C.

Proteogenomics of Colorectal Cancer Liver Metastases

Cancers, Vol. 11, Nr. 12, 2019

Type: Journal article

DOI: /doi.org/10.3390/cancers11121907

Wibberg D, Batut B, Belmann P, Blom J, Glöckner FO, Hoffmann N, Grüning B, Kleinbölting N, Rahn R, Rey M, Scholz U, Sharan M, Tauch A, Trojahn U, Usadel B, Kohlbacher O.

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR

F1000 Research, 2019, P. 1877

Type: Journal article

DOI: /doi.org/10.12688/f1000research.20244.1

Hinrichs K, Shaykhutdinov T, Kratz C, Furchner A.

Brilliant mid-infrared ellipsometry and polarimetry of thin films: Toward laboratory applications with laser based techniques

Journal of Vacuum Science & Technology B, Vol. 37, Nr. 37, 060801, 2019, P. 060801

Type: Journal article

DOI: /doi.org/https://avs.scitation.org/doi/10.1116/1.5122869

Greda K, Burhenn S, Pohl P, Franzke J.

Enhancement of emission from indium in flowing liquid anode atmospheric pressure glow discharge using organic media

Talanta, Vol. 2019, Nr. 204, 2019, P. 304–309

Type: Journal article

DOI: /doi.org/10.1016/j.talanta.2019.06.015

Vautz W, Hariharan C, Kayser O.

Fast Detection of Recent Cannabis sativa L. Consumption in Exhaled Breath using a Mobile Ion Mobility Spectrometer

Journal for Forensic Research and Crime Science, Vol. 2019, Nr. 3, 2019, P. 1–11

Type: Journal article

DOI: /doi.org/10.17303/jfrcs.2019.3.102

Blank-Landeshammer B, Teichert I, Märker R, Nowrousian M, Kück U, Sickmann A.

Combination of Proteogenomics with Peptide De Novo Sequencing Identifies New Genes and Hidden Posttranscriptional Modifications

mBio, 2019

Type: Journal article

DOI: /doi.org/10.1128/mBio.02367-19

Lategahn J, Keul M, Kloevekorn P, Tumbrink HL, Niggenaber J, Mueller MP, Hodson L, Flasshoff M, Hardick J, Grabe T, Engel J, Schultz-Fademrecht C, Baumann M, Ketzer J, Muehlenberg T, Hiller W, Guenther G, Unger A, Mueller H, Heimsoeth A, Golz C, Blank-Landeshammer B, Kollipara L, Zahedi RP, Strohmann C, Hengstler JG, van Otterlo WAL, Bauer S, Rauh D.

Inhibition of osimertinib-resistant epidermal growth factor receptor EGFR-T790M/C797S

Chemical Science, Vol. 2019, Nr. 46, 2019, P. 10789–10801

Type: Journal article

DOI: /doi.org/10.1039/c9sc03445e

Furchner A, Kratz C, Rappich J, Hinrichs K.

Hyperspectral Infrared Laser Polarimetry for Single-Shot Phase–Amplitude Imaging of Thin Films

Optics Letters, Vol. 44, Nr. 19, 2019, P. 4893–4896

Type: Journal article

DOI: /doi.org/10.1364/OL.44.004893

Yayla M, Toma A, Chen KH, Lenssen JE, Shpacovitch V, Hergenröder R, Weichert F, Chen JJ.

Nanoparticle Classification Using Frequency Domain Analysis on Resource-Limited Platforms

Sensors, Vol. 19, Nr. 19, 2019

Type: Journal article

DOI: /doi.org/10.3390/s19194138

Maximchik P, Tamarov K, Sheval E, Tolstik E, Kirchberger-Tolstik T, Yang Z, Sivakov V, Zhivotovsky B, Osminkina LA.

Biodegradable Porous Silicon Nanocontainers as an Effective Drug Carrier for Regulation of the Tumor Cell Death Pathways

Acs biomaterials science & engineering, Vol. 5, Nr. 11, 2019, P. 6063–6071

Type: Journal article

DOI: /doi.org/10.1021/acsbiomaterials.9b01292

Stanstrup J, Broeckling CD, Helmus R, Hoffmann N, Mathé E, Naake T, Nicolotti L, Peters K, Rainer J, Salek R, Schulze T, Schymanski E, Stravs MA, Thevenot E, Treutler H, Weber RJM, Willighagen E, Witting M, Neumann S.

The metaRbolomics toolbox in Bioconductor and beyond

Metabolites, 2019

Type: Journal article

DOI: /doi.org/10.3390/metabo9100200

Hoffmann N, Hartler J, Ahrends R.

JmzTab-M - A reference parser, writer and validator for the PSI mzTab 2.0 metabolomics standard

Analytical Chemistry, Vol. 91, Nr. 20, 2019, P. 12615–12618

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.9b01987

Gkogkou D, Shaykhutdinov T, Kratz C, Oates T, Hildebrandt P, Weidinger IM, Khoa Ly H, Esser N, Hinrichs K.

Gradient metal nanoislands as a unified surface enhanced Raman scattering and surface enhanced infrared absorption platform for analytics

Analyst, Vol. 144, Nr. 17, 2019, P. 5271–5276

Type: Journal article

DOI: /doi.org/10.1039/c9an00839j

Burhenn S, Kratzer J, Dědina J, Franzke J.

Influences of voltage shape and discharge gas on the temporally andspatially resolved emission characteristics of tin in a planar dielectric barrierdischarge

Spectrochimica Acta Part B-Atomic Spectroscopy, Vol. 2019, Nr. 161, 2019

Type: Journal article

Jafar MMA, Saleh MH, Al‑Daraghmeh TM, Ahmad MJA, AbuEid MA, Ershaidat NM, Bulos BN.

Structural, stoichiometric and optical constants of crystalline undoped lead iodide films prepared by the flash‑evaporation method

Applied Physics A - Materials Science & Processing, Vol. 125, Nr. 10, 2019

Type: Journal article

DOI: /doi.org/10.1007/s00339-019-2945-6

Furchner A, Kratz C, Hinrichs K.

Sub-second infrared broadband-laser single-shot phase-amplitude polarimetry of thin films

Optics Letters, Vol. 44, Nr. 17, 2019, P. 4387–4390

Type: Journal article

DOI: /doi.org/10.1364/OL.44.004387

Hänisch J, Hinrichs K, Rappich J.

Surface Functionalization toward Biosensing via Free-Standing Si-OH Bonds on Nonoxidized Silicon Surfaces

ACS Applied Materials & Interfaces, Vol. 11, Nr. 34, 2019, P. 31434–31440

Type: Journal article

DOI: /doi.org/10.1021/acsami.9b03583

Nadja M, Pyle A, Hathazi D, Alston CL, Kohlschmidt N, Gina O, Leigh W, Frances E, Cooper SBT, Christian T, Duff J, Topf A, Delia Y, Cristina J, Andrés N, Carlos O, Angels GC, Claudia G, Mar O, Saikat S, Preece MA, Michael C, Sergei K, Efsthatia C, Majumdar A, Germaine P, Daniel M, Kyle T, Placido N, Antonia R, Frederic T, Agatha S, Aurora P, Raquel M, Georgia S, Lochmüller H, Cecilia JM, Taylor RW, Rafael A, Kirschner J, Grünert SC, Roos A, Horvath R.

Clinical presentation and proteomic signature of patients with TANGO2 mutations

Journal of Inherited Metabolic Disease, Vol. 2019, Nr. 42, 2019, P. 1–12

Type: Journal article

DOI: /doi.org/10.1002/jimd.12156

Kronlage M, Dewenter M, Grosso J, Fleming T, Oehl UY, Lehmann LH, Falcão-Pires I, Leite-Moreira AF, Volk N, Gröne HJ, Müller OJ, Sickmann A, Katus HA, Backs J.

O-GlcNAcylation of Histone Deacetylase 4 Protects the Diabetic Heart from Failure

Circulation Research, Nr. 7, 2019, P. 580–594

Type: Journal article

DOI: /doi.org/10.1161/CIRCULATIONAHA.117.031942

Juhászová L, Burhenn S, Sagapova L, Franzke J, Dedina J, Kratzer J.

Hydride generation atomic absorption spectrometry with a dielectric barrier discharge atomizer

Spectrochimica Acta Part B-Atomic Spectroscopy, Vol. 2019, Nr. 158, 2019

Type: Journal article

DOI: /doi.org/10.1016/j.sab.2019.05.019

Wirthschaft P, Bode J, Soni H, Dietrich F, Krüwel T, Fischer B, Knobbe-Thomsen CB, Rossetti G, Hentschel A, Mack N, Schönig K, Breckwoldt MO, Schmandke A, Pusch S, Medenbach J, Bendszus M, Schwab ME, Deimling AV, Kool M, Herold-Mende C, Reifenberger G, Ahrends R, Tews B.

RhoA regulates translation of the Nogo-A decoy SPARC in white matter-invading glioblastomas

Acta Neuropathologica, Vol. 2019, Nr. 2, 2019, P. 275–293

Type: Journal article

DOI: /doi.org/10.1007/s00401-019-02021-z

Boutouja F, Stiehm CM, Mastalski T, Brinkmeier R, Reidick C, El Magraoui F, Platta HW.

Vps10-mediated targeting of Pep4 determines the activity of the vacuole in a substrate-dependent manner

Scientific reports, Vol. 9, Nr. 1, 2019

Type: Journal article

DOI: /doi.org/10.1038/s41598-019-47184-7

Hogan C, Suchkova S, Bechstedt F, Speiser E, Chandola S, Esser N.

Organic Molecule Adsorption on Stepped Si-Au Surfaces: Role of Functional Group on Geometry and Electronic Structure

Physica Status Solidi (b), Vol. 256, Nr. 7, 2019

Type: Journal article

DOI: /doi.org/10.1002/pssb.201800653

Boutouja F, Stiehm CM, Reidick C, Mastalski T, Brinkmeier R, Magraoui FE, Platta HW.

Vac8 Controls Vacuolar Membrane Dynamics during Different Autophagy Pathways in Saccharomyces cerevisiae

Cells, Vol. 2019, Nr. 7, 2019

Type: Journal article

DOI: /doi.org/10.3390/cells8070661

Nguyen DLC, Malchow S, Reich S, Steltgens S, Shuvaev K, Loroch S, Lorenz C, Sickmann A, Knobbe-Thomsen CB, Tews B, Medenbach J, Ahrends R.

A sensitive and simple targeted proteomics approach to quantify transcription factor and membrane proteins of the unfolded protein response pathway in glioblastoma cells

Scientific reports, Vol. 9, 2019

Type: Journal article

DOI: /doi.org/10.1038/s41598-019-45237-5

Gatz C, Hathazi D, Münchberg U, Buchkremer S, Labisch T, Munro B, Horvath R, Töpf A, Weis J, Roos A.

Identification of Cellular Pathogenicity Markers for SIL1 Mutations Linked to Marinesco-Sjogren Syndrome

Frontiers in neurology, Vol. 2019, Nr. 10, 2019, P. 1–15

Type: Journal article

DOI: /doi.org/10.3389/fneur.2019.00562

Tan Q, Hinrichs K, Huang MD, Fengler S, Rappich J, Prajongtat P, Nickel NH, Dittrich T.

Temperature dependent diffusion of DMSO in CH3NH3PbI3 precursor films during layer formation and impact on solar cells

ACS Applied Energy Materials, Vol. 2019, Nr. 27, 2019, P. 5116

Type: Journal article

Lövgren-Sandblom A, Lütjohann D, Bjorkhem I, Friedrichs S, Kerksiek A, Geilenkeuser WJ, Ahrends R, Andrade I, Ansorena D, Astiasarán I, Baila-Rueda L, Barriuso B, Becker S, Bretillon L, Browne RW, Caccia C, Ceglarek UH, Cenarro A, Crick PJ, Fauler G, García-Llatas G, Gray R, Griffiths WJ, Gylling H, Harding S, Helmschrodt C, Iuliano L, Janssen HG, Jones P, Kaipiainen L, Kannenberg F, Lagarda MJ, Leoni V, Lottenberg AM, MacKay DS, Matysik S, McDonald J, Menendez-Carreno M, Myrie SB, Sutti Nunes V, Ostlund RE, Polisecki E, Ramos F, Rideout TC, Schaefer EJ, Schmitz G, Wang Y, Zerbinati C, Diczfalusy U, Schoett HF.

First international descriptive and interventional survey for cholesterol and non-cholesterol sterol determination by gas- and liquid-chromatography-Urgent need for harmonisation of analytical methods

Journal of Steroid Biochemistry and Molecular Biology, Vol. 2019, Nr. 190, 2019, P. 115–125

Type: Journal article

DOI: /doi.org/10.1016/j.jsbmb.2019.03.025

Benítez-Páez A, Kjølbæk L, Gómez del Pulgar EM, Brahe LK, Astrup A, Matysik S, Schött HF, Krautbauer S, Liebisch G, Boberska J, Claus S, Rampelli S, Brigidi P, Larsen LH, Sanz Y.

A Multi-omics Approach to Unraveling the Microbiome-Mediated Effects of Arabinoxylan Oligosaccharides in Overweight Humans.

mSystems., Vol. 4, Nr. 4, 2019

Type: Journal article

DOI: /doi.org/DOI:10.1128/mSystems.00209-19

Kuroki H, Gruzd A, Tokarev I, Patsahan T, Ilnytskyi J, Hinrichs K, Minko S.

Biofouling-Resistant Porous Membranes with a Precisely Adjustable Pore Diameter via 3D Polymer Grafting

ACS Applied Materials & Interfaces, Vol. 11, Nr. 20, 2019, P. 18268–18275

Type: Journal article

DOI: /doi.org/10.1021/acsami.9b06679

Mnatsakanyan R, Markoutsa S, Walbrunn K, Roos A, Verhelst SHL, Zahedi RP.

Proteome-wide detection of S-nitrosylation targets and motifs using bioorthogonal cleavable-linker-based enrichment and switch technique

Nature Communications, Vol. 2019, Nr. 10(1), 2019, P. 1–12

Type: Journal article

DOI: /doi.org/10.1038/s41467-019-10182-4

Roos A, Preusse C, Hathazi D, Goebel HH, Stenzel W.

Proteomic Profiling Unravels a Key Role of Specific Macrophage Subtypes in Sporadic Inclusion Body Myositis

Frontiers in Immunology, Vol. 10, 2019, P. 1040

Type: Journal article

DOI: /doi.org/10.3389/fimmu.2019.01040

Koelbel H, Hathazi D, Jennings MJ, Horvath R, Roos A, Schara U.

Identification of Candidate Protein Markers in Skeletal Muscle of Laminin-211-Deficient CMD Type 1A-Patients

Frontiers in neurology, Vol. May 2019, Nr. 10, 2019, P. 1–16

Type: Journal article

DOI: /doi.org/10.3389/fneur.2019.00470

Breitenbach T, Lorenz K, Dandekar T.

How to Steer and Control ERK and the ERK Signaling Cascade Exemplified by Looking at Cardiac Insufficiency

International Journal of Molecular Sciences, Vol. 20, Nr. 9, 2019

Type: Journal article

DOI: /doi.org/10.3390/ijms20092179

Viplav A, Saha T, Huertas J, Selenschik P, Ebrahimkutty MP, Grill D, Lehrich J, Hentschel A, Biasizzo M, Mengoni S, Ahrends R, Gerke V, Cojocaru V, Klingauf J, Galic M.

ArhGEF37 assists dynamin 2 during clathrin-mediated endocytosis

Journal of Cell Science, Vol. 132, Nr. 9, 2019, P. jcs226530

Type: Journal article

DOI: /doi.org/10.1242/jcs.226530

Müntze J, Gensler D, Maniuc O, Liu D, Cairns T, Hu K, Lorenz K, Frantz S, Wanner C, Nordbeck P.

Oral Chaperone Therapy Migalastat for Treating Fabry Disease: Enzymatic Response and Serum Biomarker Changes After 1 Year

Clinical pharmacology and therapeutics, Vol. 2019, Nr. 5, 2019, P. 1224–1233

Type: Journal article

DOI: /doi.org/10.1002/cpt.1321

Ogieglo W, Furchner A, Ma X, Hazazi K, Alhazmi AT, Pinnau I.

Thin Composite Carbon Molecular Sieve Membranes from a Polymer of Intrinsic Microporosity Precursor

ACS Applied Materials & Interfaces, Vol. 11, Nr. 20, 2019, P. 18770–18781

Type: Journal article

Davies AN, Lampen P, Lancashire R.

Are you taking your Metadata seriously?

Spectroscopy Europe, Vol. 31, Nr. 2, 2019, P. 19–23

Type: Journal article

Phan V, Cox D, Cipriani S, Spendiff S, Buchkremer S, O'Connor E, Horvath R, Goebel HH, Hathazi D, Lochmüller H, Straka T, Rudolf R, Weis J, Roos A.

SIL1 deficiency causes degenerative changes of peripheral nerves and neuromuscular junctions in fish, mice and human

Neurobiology of Disease, Vol. 124, 2019, P. 218–229

Type: Journal article

DOI: /doi.org/10.1016/j.nbd.2018.11.019

Vogel P, Marggraf U, Brandt S, García-Reyes JF, Franzke J.

Analyte-Tailored Controlled Atmosphere Improves Dielectric Barrier Discharge Ionization Mass Spectrometry Performance

Analytical Chemistry, Vol. 91, Nr. 5, 2019, P. 3733–3739

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.9b00112

Kopczynski D, Bittremieux W, Bouyssié D, Dorfer V, Locard-Paulet M, Van Puyvelde B, Schwämmle V, Soggiu A, Willems S, Uszkoreit J.

Proceedings of the EuBIC Winter School 2019

EuPA Open Proteomics, 2019, P. 4–7

Type: Journal article

DOI: /doi.org/10.1016/j.euprot.2019.07.002

Scholz K, Baune M, Hayen H, Jiang W.

Separation and Identification of Non-Covalent Metal Complexes from Bacteria by HILIC–MS

LC-GC North America, Vol. 36, Nr. 3, 2019, P. 165–166

Type: Journal article

Hupfer ML, Kaufmann M, Roussille L, Preiss J, Weiss D, Hinrichs K, Deckert V, Dietzek B, Beckert R, Presselt M.

Arylic versus Alkylic-Hydrophobic Linkers Determine the Supramolecular Structure and Optoelectronic Properties of Tripodal Amphiphilic Push-Pull Thiazoles

Langmuir, Vol. 35, Nr. 7, 2019, P. 2561–2570

Type: Journal article

DOI: /doi.org/10.1021/acs.langmuir.8b03893

Alwahsh M, Hofney Othman A, Hamadneh L, Telfah A, Lambert J, Hikmat S, Alassi A, El Zahraa Mohamed F, Hergenröder R, Al-Qirim T, Dooley S, Hammad S.

Second exposure to acetaminophen overdose is associated with liver fibrosis in mice

EXCLI Journal, Vol. 18, 2019, P. 51–62

Type: Journal article

DOI: /doi.org/10.17179/excli2018-1920

Burhenn S, Kratzer J, Klute D, Dědina J, Franzke J.

Atomization of arsenic hydride in a planar dielectric barrier discharge

Spectrochimica Acta Part B-Atomic Spectroscopy, Vol. 2019, Nr. 152, 2019, P. 68–73

Type: Journal article

DOI: /doi.org/10.1016/j.sab.2018.12.006

Esser N, Schmidt WG.

Electric Field Induced Raman Scattering at the Sb-InP(110) Interface

Physica Status Solidi (b), Vol. 256, Nr. 256, 2019

Type: Journal article

DOI: /doi.org/10.1002/pssb.201800314

Sun G, Zu F, Koch N, Rappich J, Hinrichs K.

In-situ infrared spectroscopic monitoring and characterization of the growth of polydopamine (PDA) films

Physica Status Solidi (b), Vol. 256, Nr. 2, 2019

Type: Journal article

DOI: /doi.org/10.1002/pssb.201800308

Speiser E, Plaickner J, Chandola S, Esser N, Halbig B, Geurts J.

Raman Spectroscopy on Surface Phonons of Si(hhk) Surfaces Modified by Au Submonolayers

Physica Status Solidi (b), Vol. 2019, Nr. 256, 2019

Type: Journal article

DOI: /doi.org/10.1002/pssb.201800341