Publications

Ashwood C, Bittremieux W, Deutsch E, Doncheva N, Dorfer V, Gabriels R, Gorshkov V, Gupta S, Jones AR, Käll L, Kopczynski D, Lane L, Lautenbacher L, Legeay M, Locard-Paulet M, Mesuere B, Perez-Riverol Y, Netz E, Pfeuffer J, Sachsenberg T, Salz R, Samaras P, Schiebenhoefer H, Schmidt T, Schwämmle V, Soggiu A, Uszkoreit J, Van Den Bossche T, Van Puyvelde B, Van Strien J, Verschaffelt P, Webel H, Willems S.

Proceedings of the EuBIC-MS 2020 Developers’ Meeting

EuPA Open Proteomics, 2020

Type: Journal article

DOI: /doi.org/10.1016/j.euprot.2020.11.001

Chakrabarty S, Verhelst SHL.

Controlled Inhibition of Apoptosis by Photoactivatable Caspase Inhibitors

Cell Chemical Biology, Vol. 27, Nr. 11, 2020, P. 1434–1440.e10

Type: Journal article

DOI: /doi.org/10.1016/j.chembiol.2020.08.001

Usfoor Z, Kaufmann K, Rakib ASH, Hergenröder R, Shpacovitch V.

Features of Sizing and Enumeration of Silica and Polystyrene Nanoparticles by Nanoparticle Tracking Analysis (NTA)

Sensors, Vol. 20, Nr. 22, 2020

Type: Journal article

Furchner A, Kratz C, Hinrichs K.

Laser-IR-Ellipsometrie für die Oberflächenanalytik

GIT Labor-Fachzeitschrift, Vol. 2020, Nr. 11, 2020, P. 36–38

Type: Journal article

Volz J, Kusch C, Beck S, Popp M, Vögtle T, Meub M, Scheller I, Heil HS, Preu J, Schuhmann MK, Hemmen K, Premsler T, Sickmann A, Heinze KG, Stegner D, Stoll G, Braun A, Sauer M, Nieswandt B.

BIN2 orchestrates platelet calcium signaling in thrombosis and thrombo-inflammation

The Journal of Clinical Investigation, Vol. 130, Nr. 11, 2020, P. 6064–6079

Type: Journal article

DOI: /doi.org/10.1172/JCI136457

Knodel A, Foest D, Brandt S, Ahlmann N, Marggraf U, Gilbert López B, Franzke J.

Detection and Evaluation of Lipid Classes and Other Hydrophobic Compounds Using a Laser Desorption/Plasma Ionization Interface

Analytical Chemistry, Vol. 2020, 2020

Type: Journal article

Jarmusch SA, Feldmann I, Blank-Landeshammer B, Cortés-Albayay C, Castro JF, Andrews B, Asenjo JA, Sickmann A, Ebel R, Jaspars M.

Cutting the Gordian knot: early and complete amino acid sequence confirmation of class II lasso peptides by HCD fragmentation

The Journal of Antibiotics, Vol. 73, Nr. 11, 2020, P. 772–779

Type: Journal article

DOI: /doi.org/10.1038/s41429-020-00369-z

Comer S, Nagy Z, Bolado A, von Kriegsheim A, Gambaryan S, Walter U, Pagel O, Zahedi RP, Jurk K, Smolenski A.

The RhoA regulators Myo9b and GEF-H1 are targets of cyclic nucleotide-dependent kinases in platelets

Journal of Thrombosis and Haemostasis : JTH, Vol. 18, Nr. 11, 2020, P. 3002–3012

Type: Journal article

DOI: /doi.org/10.1111/jth.15028

Beneito-Cambra M, Gilbert-López B, Moreno-González D, Bouza M, Franzke J, García-Reyes JF, Molina-Díaz A.

Ambient (desorption/ionization) mass spectrometry methods for pesticide testing in food

Analytical Methods, Vol. 12, Nr. 40, 2020, P. 4831–4852

Type: Journal article

DOI: /doi.org/10.1039/d0ay01474e

Sims MC, Mayer L, Collins J, Bariana T, Megy K, Lavenu-Bombled C, Seyres D, Kollipara L, Burden F, Greene D, Lee D, Rodriguez-Romera A, Alessi MC, Astle WJ, Bahou W, Bury L, Chalmers E, Da Silva R, De Candia E, Deevi SVV, Farrow S, Gomez K, Grassi L, Greinacher A, Gresele P, Hart DP, Hurtaud MF, Kelly A, Kerr R, Le Quellec S, Leblanc TM, Leinøe EB, Mapeta RP, McKinney H, Michelson AD, Morais S, Nugent DJ, Papadia S, Park SJ, Pasi J, Podda GM, Poon MC, Reed R, Sekhar M, Shalev H, Sivapalaratnam S, Steinberg-Shemer O, Stephens JC, Tait RC, Turro E, Wu JK, Zieger BMH, Kuijpers TW, Whetton AD, Sickmann A, Freson K, Downes K, Erber W, Frontini M, Nurden P, Ouwehand WH, Favier R, Guerrero JA.

Novel manifestations of immune dysregulation and granule defects in gray platelet syndrome

Blood, Vol. 136, Nr. 17, 2020, P. 1956–1967

Type: Journal article

DOI: /doi.org/10.1182/blood.2019004776

Vanhoutte R, van de Plassche MAT, Verhelst SHL.

Rapid Solid-Phase Construction of Serine Hydrolase Probes Results in Selective Activity-Based Probes for Acyl Protein Thioesterases-1/2

Journal of Medicinal Chemistry, Vol. 63, Nr. 20, 2020, P. 11845–11853

Type: Journal article

DOI: /doi.org/10.1021/acs.jmedchem.0c01043

Knorrscheidt A, Püllmann P, Schell E, Homann D, Freier E, Weissenborn MJ.

Identification of novel unspecific peroxygenase chimeras and unusual YfeX axial heme ligand by a versatile high-throughput GC-MS approach

ChemCatChem, Vol. 12, Nr. 19, 2020, P. 4788–4795

Type: Journal article

DOI: /doi.org/10.1002/cctc.202000618

Hoffmann N, Kopczynski D, Al Machot F, Schwudke D, Miranda Ackermann J, Shevchenko A, Ahrends R.

Lipidomics – How Lipids Control Blood Coagulation

2020

Book series: DATA ANALYSIS FOR INSIGHTS INTO COMPLEX BIOLOGICAL SYSTEMS

Type: Book contribution

Hack T, Bertram S, Blair H, Borger V, Busche G, Denson L, Fruth E, Giebel B, Heidenreich O, Klein-Hitpass L, Kollipara L, Sendker S, Sickmann A, Walter C, von Neuhoff N, Hanenberg H, Reinhardt D, Schneider M, Rasche M.

Exposure of patient-derived mesenchymal stromal cells to TGFB1 supports fibrosis induction in a pediatric acute megakaryoblastic leukemia model

Molecular Cancer Research, Vol. 18, Nr. 10, 2020, P. 1603–1612

Type: Journal article

DOI: /doi.org/10.1158/1541-7786.MCR-20-0091

Metzger P, Kirchleitner SV, Boehmer DFR, Hörth C, Eisele A, Ormanns S, Gunzer M, Lech M, Lauber K, Endres S, Duewell P, Schnurr M, König LM.

Systemic but not MDSC-specific IRF4 deficiency promotes an immunosuppressed tumor microenvironment in a murine pancreatic cancer model

Cancer Immunology, Immunotherapy, Vol. 69, Nr. 10, 2020, P. 2101–2112

Type: Journal article

DOI: /doi.org/10.1007/s00262-020-02605-9

Stein V, Blank-Landeshammer B, Muentjes K, Maerker R, Teichert I, Feldbruegge M, Sickmann A, Kueck U.

The STRIPAK signaling complex regulates dephosphorylation of GUL1, an RNA-binding protein that shuttles on endosomes

Plos genetics, Vol. 16, Nr. 9, 2020, P. e1008819

Type: Journal article

DOI: /doi.org/10.1371/journal.pgen.1008819

Kopczynski D, Hentschel A, Coman C, Schebb NH, Hornemann T, Mashek D, Hartung NM, Shevchuk O, Schött HF, Lorenz K, Torta F, Burla B, Zahedi RP, Sickmann A, Kreutz MR, Ejsing C, Medenbach J, Ahrends R.

Simple targeted assays for metabolic pathways and signaling: a powerful tool for targeted proteomics

Analytical Chemistry, Vol. 92, Nr. 20, 2020, P. 13672–13676

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.0c02793

Mailer RK, Allende M, Heestermans M, Schweizer M, Deppermann C, Frye M, Pula G, Odeberg J, Gelderblom MP, Rose-John S, Sickmann A, Blankenberg S, Huber TB, Kubisch C, Maas C, Gambaryan S, Firsov D, Stavrou EX, Butler L, Renné T.

Xenotropic and polytropic retrovirus receptor 1 regulates procoagulant platelet polyphosphate

Blood, 2020

Type: Journal article

DOI: /doi.org/10.1182/blood.2019004617

Koenig M, Trouillet V, Welle A, Hinrichs K, Lahann J.

Molecular Changes in Vapor-based Polymer Thin Films Assessed by Characterization of Swelling Properties of Amine-Functionalized Poly-p-xylylene

Macromolecular Chemistry and Physics, Vol. 221, Nr. 19, 2020

Type: Journal article

DOI: /doi.org/10.1002/macp.202000213

Kahler JP, Lenders S, van de Plassche MAT, Verhelst SHL.

Facile Synthesis of Aminomethyl Phosphinate Esters as Serine Protease Inhibitors with Primed Site Interaction

Bioorganic & Medicinal Chemistry Letters, Vol. 11, Nr. 9, 2020, P. 1739–1744

Type: Journal article

DOI: /doi.org/10.1021/acsmedchemlett.0c00284

van de Plassche MAT, Barniol-Xicota M, Verhelst SHL.

Peptidyl Acyloxymethyl Ketones as Activity-Based Probes for the Main Protease of SARS-CoV-2

ChemBioChem, 2020

Type: Journal article

DOI: /doi.org/10.1002/cbic.202000371

Petereit J, Duncan O, Murcha MW, Fenske R, Cincu E, Cahn J, Pruzinska A, Ivanova A, Kollipara L, Wortelkamp S, Sickmann A, Lee J, Lister R, Millar AH, Huang S.

Mitochondrial CLPP2 assists coordination and homeostasis of respiratory complexes

Plant Physiology, Vol. 184, Nr. 184, 2020, P. 148–164

Type: Journal article

DOI: /doi.org/10.1104/pp.20.00136

Koelbel H, Roos A, van der Ven PFM, Evangelista T, Nolte K, Johnson K, Töpf A, Wilson M, Kress W, Sickmann A, Straub V, Kollipara L, Weis J, Fürst DO, Schara U.

First Clinical and Myopathological Description of a Myofibrillar Myopathy with Congenital Onset and Homozygous Mutation in FLNC

Human mutation, Vol. 41, Nr. 9, 2020, P. 1600–1614

Type: Journal article

DOI: /doi.org/10.1002/humu.24062

Burhenn S, Kratzer J, Franzke J.

Temporal evolution of tellurium emission lines in a capillary dielectric barrier discharge after hydride generation

Spectrochimica Acta Part B-Atomic Spectroscopy, Vol. 171, 2020

Type: Journal article

DOI: /doi.org/10.1016/j.sab.2020.105936

Drees C, Schütz A, Niu G, Franzke J, Vautz W, Brandt S.

Stepwise optimization of a Flexible Microtube Plasma (FµTP) as an ionization source for Ion Mobility Spectrometry

Analytica Chimica Acta, Vol. 1127, 2020, P. 89–97

Type: Journal article

DOI: /doi.org/10.1016/j.aca.2020.06.018

Kopczynski D, Hoffmann N, Peng B, Ahrends R.

Goslin - A Grammar of Succinct Lipid Nomenclature

Analytical Chemistry, Vol. 92, Nr. 16, 2020, P. 10957–10960

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.0c01690

Kasabri V, Arabiyat S, Al-Hiari Y, Zalloum H, Almaliti J, Telfah A, Bustanji YK, Alalawi S.

Fluoroquinolones as a potentially novel class of antidiabesity and antiproliferative compounds: synthesis and docking studies

Canadian Journal of Chemistry, Vol. 98, Nr. 10, 2020, P. 635–645

Type: Journal article

DOI: /doi.org/10.1139/cjc-2020-0162

Sunoqrot S, Mahmound NN, Ibrahim LH, Al-Dabash S, Raschke H, Hergenröder R.

Tuning the Surface Chemistry of Melanin-Mimetic Polydopamine Nanoparticles Drastically Enhances Their Accumulation into Excised Human Skin

ACS Biomaterials Science & Engineering, Vol. 6, Nr. 8, 2020, P. 4424–4432

Type: Journal article

DOI: /doi.org/10.1021/acsbiomaterials.0c00196

Kahler JP, Vanhoutte R, Verhelst SHL.

Activity-Based Protein Profiling of Serine Proteases in Immune Cells

Archivum immunologiae et therapiae experimentalis, Vol. 68, Nr. 4, 2020

Type: Journal article

DOI: /doi.org/10.1007/s00005-020-00586-2

Vogel P, Lazarou C, Gazeli O, Brandt S, Franzke J, Moreno-González D.

Study of Controlled Atmosphere Flexible Microtube Plasma Soft Ionization Mass Spectrometry for Detection of Volatile Organic Compounds as Potential Biomarkers in Saliva for Cancer

Analytical Chemistry, Vol. 92, Nr. 14, 2020, P. 9722–9729

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.0c01063

Bornemann L, Schuster M, Schmitz S, Sobczak C, Bessen C, Merz SF, Jöckel KH, Haverkamp T, Gunzer M, Göthert JR.

Defective migration and dysmorphology of neutrophil granulocytes in atypical chronic myeloid leukemia treated with ruxolitinib

BMC cancer, Vol. 20, Nr. 1, 2020, P. 650

Type: Journal article

DOI: /doi.org/10.1186/s12885-020-07130-7

Hinrichs K, Kratz C, Furchner A.

Hyperspectral mid-infrared ellipsometric measurements in the twinkling of an eye

Spectroscopy Asia, Vol. 16, Nr. 2, 2020, P. 8–12

Type: Journal article

DOI: /doi.org/https://www.spectroscopyasia.com/content/volume-16-issue-2-2020

Furchner A, Kratz C, Hinrichs K.

Laser IR ellipsometry for surface analytics - Hyperspectral and microfluidic applications

2020

Book series: Laser IR ellipsometry for surface analytics

Type: Book contribution

DOI: /doi.org/https://analyticalscience.wiley.com/do/10.1002/was.00080139

Swieringa F, Solari F, Pagel O, Beck F, Huang J, Feijge M, Jurk K, Koerver-Keularts IMLW, Mattheij NJA, Faber J, Pohlenz J, Russo A, Stumpel CTRM, Schrander DE, Zieger B, van der Meijden P, Zahedi RP, Sickmann A, Heemskerk JWM.

Impaired iloprost-induced platelet inhibition and phosphoproteome changes in patients with confirmed pseudohypoparathyroidism type Ia, linked to genetic mutations in GNAS

Scientific reports, Vol. 10, Nr. 1, 2020, P. 11389

Type: Journal article

DOI: /doi.org/10.1038/s41598-020-68379-3

Ebersbach P, Münchberg U, Freier E.

SERS Background Imaging – a Versatile Tool Towards More Reliable SERS Analytics

ChemRxiv, 2020

Type: Journal article

DOI: /doi.org/10.26434/chemrxiv.12589013

Jeanclos E, Knobloch G, Hoffmann A, Fedorchenko O, Odersky A, Lamprecht AK, Schindelin H, Gohla A.

Ca2+ functions as a molecular switch that controls the mutually exclusive complex formation of pyridoxal phosphatase with CIB1 or Calmodulin

FEBS Letters, Vol. 594, Nr. 13, 2020, P. 2099–2115

Type: Journal article

DOI: /doi.org/10.1002/1873-3468.13795

Künzel SR, Rausch JSE, Schäffer C, Hoffmann M, Künzel K, Klapproth E, Kant T, Herzog N, Küpper JH, Lorenz K, Dudek S, Emig R, Ravens U, Rog-Zielinska EA, Peyronnet R, El-Armouche A.

Modeling atrial fibrosis in vitro - Generation and characterization of a novel human atrial fibroblast cell line

FEBS open bio, Vol. 10, Nr. 7, 2020, P. 1210–1218

Type: Journal article

DOI: /doi.org/10.1002/2211-5463.12896

Scheidt T, Alka O, Gonczarowska-Jorge H, Gruber W, Rathje F, Dell'Aica M, Rurik M, Kohlbacher O, Zahedi RP, Aberger F, Huber CG.

Phosphoproteomics of short-term hedgehog signaling in human medulloblastoma cells

Cell communication and signaling, Vol. 18, Nr. 1, 2020

Type: Journal article

DOI: /doi.org/10.1186/s12964-020-00591-0

Kratz C, Furchner A, Sun G, Rappich J, Hinrichs K.

Sensing and structure analysis by in situ IR spectroscopy: From mL flow cells to microfluidic applications

Journal of Physics - Condensed Matter, Vol. 32, Nr. 39, 2020

Type: Journal article

DOI: /doi.org/https://iopscience.iop.org/article/10.1088/1361-648X/ab8523

Mokhtari DJ, Jum'h I, Baaziz H, Charifi Z, Ghellab T, Telfah A, Hergenröder R.

Structural, electronic, magnetic and thermoelectric properties of inverse Heusler alloys Ti2CoSi, Mn2CoAl and Cr2ZnSi by employing Ab initio calculations

Philosophical magazine, Vol. 100, Nr. 12, 2020, P. 1636–1661

Type: Journal article

DOI: /doi.org/10.1080/14786435.2020.1731926

Alsaad AM, Al‑Bataineh QM, Telfah M, Ahmad AA, Albataineh Z, Telfah A.

Optical properties and photo‑isomerization processes of PMMA–BDK–MR nanocomposite thin films doped by silica nanoparticles

Polymer Bulletin, Vol. 2020, 2020

Type: Journal article

DOI: /doi.org/10.1007/s00289-020-03273-6

Reich S, Nguyen DLC, Has C, Steltgens S, Soni H, Coman C, Freyberg M, Bichler A, Seifert N, Conrad D, Knobbe-Thomsen CB, Tews B, Toedt G, Ahrends R, Medenbach J.

A multi-omics analysis reveals the unfolded protein response regulon and stress-induced resistance to folate-based antimetabolites

Nature Communications, Vol. 11, Nr. 1, 2020

Type: Journal article

DOI: /doi.org/10.1038/s41467-020-16747-y

Al-Bataineh QM, Alsaad AM, Ahmad AA, Telfah A.

A novel optical model of the experimental transmission spectra of nanocomposite PVC-PS hybrid thin films doped with silica nanoparticles

Heliyon, Vol. 2020, Nr. 6, 2020, P. e04177

Type: Journal article

DOI: /doi.org/10.1016/j.heliyon.2020.e04177

Strandberg K, Ayoglu B, Roos A, Reza M, Niks EH, Signorelli M, Fasterius E, Pontén F, Lochmüller H, Domingos J, Pierpaolo A, Muntoni F, Aartsma-Rus A, Spitali P, Nilsson P, Al-Khalili-Szigyarto C.

Blood-derived biomarkers correlate with clinical progression in Duchenne muscular dystrophy

Journal of Neuromuscular Diseases, Vol. 2020, Nr. 3, 2020, P. 231–246

Type: Journal article

DOI: /doi.org/10.3233/JND-190454

Scheller I, Stritt S, Beck S, Peng B, Pleines I, Heinze KG, Braun A, Otto O, Ahrends R, Sickmann A, Bender M, Nieswandt B.

Coactosin-like 1 integrates signaling critical for shear-dependent thrombus formation in mouse platelets

Haematologica, Vol. 105, Nr. 6, 2020, P. 1667–1676

Type: Journal article

DOI: /doi.org/10.3324/haematol.2019.225516

Hentschel A, Ahrends R.

Developing a Robust Assay to Monitor and Quantify Key Players of Metabolic Pathways during Adipogenesis by Targeted Proteomics

Proteomics, Vol. 20, Nr. 11, 2020

Type: Journal article

DOI: /doi.org/10.1002/pmic.201900141

Alsaad AM, Al-Bataineh QM, Ahmad AA, Albataineh Z, Telfah A.

Optical band gap and refractive index dispersion parameters of boron-doped ZnO thin films: A novel derived mathematical model from the experimental transmission spectra

Optik, Vol. 2020, Nr. 211, 2020, P. 164641–164654

Type: Journal article

DOI: /doi.org/10.1016/j.ijleo.2020.164641

AlKhalil M, Al-Hiari Y, Kasabri V, Arabiyat S, Al-Zweiri M, Mamdooh N, Telfah A.

Selected pharmacotherapy agents as antiproliferative and anti‐inflammatory compounds

Drug Development Research, Vol. 2020, Nr. 81, 2020, P. 470–490

Type: Journal article

DOI: /doi.org/10.1002/ddr.21640

Shpacovitch V, Hergenröder R.

Surface Plasmon Resonance (SPR)-Based Biosensors as Instruments with High Versatility and Sensitivity

Sensors, Vol. 20, Nr. 11, 2020

Type: Journal article

DOI: /doi.org/10.3390/s20113010

Gonzalez-Beltran AN, Masuzzo P, Ampe C, Bakker GJ, Besson S, Eibl RH, Friedl P, Gunzer M, Kittisopikul M, Dévédec SEL, Leo S, Moore J, Paran Y, Prilusky J, Rocca-Serra P, Besson, S, Roudot P, Schuster M, Sergeant G, Strömblad S, Swedlow JR, van Erp M, Van Troys M, Zaritsky A, Sansone SA, Martens L.

Community standards for open cell migration data

GigaScience, Vol. 9, Nr. 5, 2020

Type: Journal article

DOI: /doi.org/10.1093/gigascience/giaa041