Publications

Labisch T, Buchkremer S, Phan VX, Kollipara L, Gatz C, Lentz C, Nolte K, Vervoorts J, González Coraspe JA, Sickmann A, Carr S, Zahedi RP, Weis J, Roos A.

Tracking Effects of SIL1 Increase

Molecular Neurobiology, Vol. 55, Nr. 3, 2018, P. 2524–2546

Type: Journal article

DOI: /doi.org/10.1007/s12035-017-0494-6

Martins F, Marafona AM, Pereira CD, Müller T, Loosse C, Kolbe K, da Cruz e Silva OAB, Rebelo S.

Identification and characterization of the BRI2 interactome in the brain

Scientific reports, Vol. 8, Nr. 1, 2018, P. 3548

Type: Journal article

DOI: /doi.org/10.1038/s41598-018-21453-3

Kratz C, Furchner A, Oates T, Janasek D, Hinrichs K.

Nanoliter Sensing for Infrared Bioanalytics

ACS Sensors, Vol. 3, Nr. 2, 2018, P. 299–303

Type: Journal article

DOI: /doi.org/10.1021/acssensors.7b00902

Gyr L, Wolf JC, Franzke J, Zenobi R.

Mechanistic Understanding Leads to Increased Ionization Efficiency and Selectivity in Dielectric Barrier Discharge Ionization Mass Spectrometry

Analytical Chemistry, Vol. 90, Nr. 4, 2018, P. 2725–2731

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.7b04711

Juneja M, Azmi A, Baets J, Roos A, Jennings MJ, Saveri P, Pisciotta C, Bernard-Marissal N, Schneider BL, Verfaillie C, Chrast R, Seeman P, Hahn AF, de Jonghe P, Maudsley S, Horvath R, Pareyson D, Timmerman V.

PFN2 and GAMT as common molecular determinants of axonal Charcot-Marie-Tooth disease

Journal of Neurology, Neurosurgery, and Psychiatry, Vol. 89, Nr. 8, 2018, P. 870–878

Type: Journal article

DOI: /doi.org/10.1136/jnnp-2017-317562

Stuhr M, Blank-Landeshammer B, Reymond CE, Kollipara L, Sickmann A, Kucera M, Westphal H.

Disentangling thermal stress responses in reef calcifiers and their photosymbionts by shotgun proteomics

Scientific reports, Vol. 8, 2018

Type: Journal article

DOI: /doi.org/10.1038/s41598-018-21875-z

Joos J, Staadatmand A, Schnabel C, Viktorinova I, Brand T, Kramer M, Nattel S, Dobrev D, tomancak P, Backs J, Kleinbongard P, Heusch G, Lorenz K, Koch E, Weber S, El-Armouche A.

Ectopic expression of S28A-mutated Histone H3 modulates longevity, stress resistance and cardiac function in Drosophila

Scientific reports, Vol. 8, 2018

Type: Journal article

DOI: /doi.org/10.1038/s41598-018-21372-3

Dobrev D, Lorenz K.

Age-dependent increase in c-Jun N-terminal kinase-2 activity: does this help to understand Ca2+-calmodulin-dependent protein-kinase II-mediated atrial arrhythmogenesis in human atrial fibrillation?

Cardiovascular Research, Vol. 114, Nr. 5, 2018, P. 641–642

Type: Journal article

DOI: /doi.org/10.1093/cvr/cvy037

Vanhoutte R, Kahler JP, Martin S, van Veen S, Verhelst SHL.

Clickable polyamine derivatives as chemical probes for the polyamine transport system

ChemBioChem, Vol. 19, Nr. 9, 2018, P. 907–911

Type: Journal article

DOI: /doi.org/10.1002/cbic.201800043

Gogiashvili M, Horsch S, Marchan R, Gianmoena K, Cadenas C, Tanner B, Naumann S, Ersova D, Lippek F, Rahnenführer J, Andersson JT, Hergenröder R, Lambert J, Hengstler JG, Edlund K.

Impact of intratumoral heterogeneity of breast cancer tissue on quantitative metabolomics using high resolution magic angle spinning 1H-NMR

NMR in Biomedicine, Vol. 31, Nr. 2, 2018

Type: Journal article

DOI: /doi.org/10.1002/nbm.3862

Gotru SK, Chen W, Kraft P, Becker IC, Wolf K, Stritt S, Zierler S, Hermanns HM, Rao D, Perraud AL, Schmitz C, Zahedi RP, Noy PJ, Tomlinson MG, Dandekar T, Matsushita M, Chubanov V, Gudermann T, Stoll G, Nieswandt B, Braun A.

TRPM7 Kinase Controls Calcium Responses in Arterial Thrombosis and Stroke in Mice

Arteriosclerosis, Thrombosis, and Vascular Biology, Vol. 38, Nr. 2, 2018, P. 344–352

Type: Journal article

DOI: /doi.org/10.1161/ATVBAHA.117.310391

Skinner J, Wang S, Lee J, Ong C, Sommese R, Sivaramakrishnan S, Koelmel W, Hirschbeck M, Schindelin H, Kisker C, Lorenz K, Sosnick TR, Rosner MR.

Conserved Salt-Bridge Competition Triggered by Phosphorylation Regulates the Protein Interactome

Vol. 27, 2018, P. 122

Book series: Award Winners and Abstracts of the 32nd Annual Symposium of the Protein Society

Type: Book contribution

DOI: /doi.org/10.1002/pro.3513

Suchkova S, Hogan C, Bechstedt F, Speiser E, Esser N.

Selective adsorption of toluene-3,4-dithiol on Si(553)-Au surfaces

Physical Review B, Vol. 97, Nr. 4, 2018

Type: Journal article

DOI: /doi.org/10.1103/PhysRevB.97.045417

Halbig B, Liebhaber M, Bass U, Geurts J, Speiser E, Räthel J, Chandola S, Esser N, Krenz M, Neufeld , Schmidt WG, Sanna S.

Vibrational properties of the Au-(√3 ×√3)/Si(111) surface reconstruction

Physical Review B, Vol. 2018, Nr. 3, 2018

Type: Journal article

DOI: /doi.org/10.1103/PhysRevB.97.035412

El Magraoui F, Schrötter A, Beine B, Meyer H, Henkel C.

Mass Spectrometry

Vol. 1, 2018, P. 1 – 1137

Book series: Bioanalytics: Analytical Methods and Concepts in Biochemistry and Molecular Biology

Type: Book contribution

ISBN: 978-3-527-33919-8

Furchner A, Aulich D.

Common Polymers and Proteins

Springer Heidelberg, 2018, P. 512–527

Book series: Ellipsometry of Functional Organic Surfaces and Films

Type: Book contribution

ISBN: 978-3-319-75894-7

DOI: /doi.org/10.1007/978-3-319-75895-4_23

Furchner A, Aulich D.

Organic Materials for Optoelectronic Applications

Springer Heidelberg, 2018, P. 529–538

Book series: Ellipsometry of Functional Organic Surfaces and Films

Type: Book contribution

ISBN: 978-3-319-75894-7

DOI: /doi.org/10.1007/978-3-319-75895-4_24

Bittrich E, Furchner A, Koenig M, Aulich D, Uhlmann P, Hinrichs K, Eichhorn KJ.

Polymer Brushes, Hydrogels, Polyelectrolyte Multilayers: Stimuli-Responsivity and Control of Protein Adsorption

Springer Heidelberg, 2018, P. 115–143

Book series: Ellipsometry of Functional Organic Surfaces and Films

Type: Book contribution

ISBN: 978-3-319-75894-7

DOI: /doi.org/10.1007/978-3-319-75895-4_6

Furchner A.

Structure and Interactions of Polymer Thin Films from Infrared Ellipsometry

Springer Heidelberg, 2018, P. 145–171

Book series: Ellipsometry of Functional Organic Surfaces and Films

Type: Book contribution

ISBN: 978-3-319-75894-7

DOI: /doi.org/10.1007/978-3-319-75895-4_7

Xing Y, Dittrich PS.

One-Dimensional Nanostructures: Microfluidic-Based Synthesis, Alignment and Integration towards Functional Sensing Devices

Sensors, Vol. 18, Nr. 134, 2018

Type: Journal article

DOI: /doi.org/10.3390/s18010134

Rappich J, Hinrichs K, Sun G, Zhang X.

Chapter 20: Application of In-Situ IR-Ellipsometry in Silicon Electrochemistry to Study Ultrathin Films

Springer International Publishing AG, 2018, P. 287–302

Book series: Ellipsometry of Functional Organic Surfaces and Films

Type: Book contribution

ISBN: 978-3-319-75894-7

Pop S, Hinrichs K, Wenmackers S, Cobet C, Esser N, Zahn DRT.

Chapter 3: DNA Structures on Silicon and Diamond

Springer International Publishing AG, 2018, P. 49–62

Book series: Ellipsometry of Functional Organic Surfaces and Films

Type: Book contribution

ISBN: 978-3-319-75894-7

DOI: /doi.org/10.1007/978-3-642-40128-2_3

Oates T.

Chapter 6: Systems of Nanoparticles with SAMs and Polymers

Springer International Publishing AG, 2018, P. 109–133

Book series: Ellipsometry of Functional Organic Surfaces and Films

Type: Book contribution

ISBN: 978-3-319-75894-7

DOI: /doi.org/10.1007/978-3-642-40128-2

Goncalves P, Verhelst SHL.

Chemical probes targeting proteases for imaging and diagnostics in cancer

John Wiley and Sons, 2018, P. 351–376

Book series: Extracellular Targeting of Cell Signaling in Cancer: Strategies Directed at MET and RON Receptor Tyrosine Kinase Pathways

Type: Book contribution

O'Connor E, Töpf A, Zahedi RP, Spendiff S, Cox D, Roos A, Lochmüller H.

Clinical and research strategies for limb-girdle congenital myasthenic syndromes

Annals of the new york academy of sciences, Vol. 1412, Nr. 1, 2018, P. 102–112

Type: Journal article

DOI: /doi.org/10.1111/nyas.13520

Hinrichs K, Shaykhutdinov T, Kratz C, Rösicke F, Schöniger C, Arenz C, Nickel NH, Rappich J.

Electrochemical Modification of Large Area Graphene and Characterization by Vibrational Spectroscopy

2018

Book series: Encyclopedia of Interfacial Chemistry

Type: Book contribution

ISBN: 9780128097397

DOI: /doi.org/10.1016/B978-0-12-409547-2.14194-0

Rappich J, Sun G, Hinrichs K.

In Situ Monitoring of the Electrochemical Surface Modification by Thin Organic Layers

World Scientific Publishing Co., Vol. 3, 2018, P. 205–255

Book series: Advanced Green Chemistry

Type: Book contribution

ISBN: 9789813228108

DOI: /doi.org/10.1142/9789813228115_0006

Hoffmann N.

Metabolite structure ambiguity – representation, standardization, and naming

Dagstuhl Reports, Vol. 7, 2018, P. 1–17

Book series: Computational Metabolomics: Identification, Interpretation, Imaging (Dagstuhl Seminar 17491)

Type: Book contribution

DOI: /doi.org/10.4230/DagRep.7.12.1

Esser N, Speiser E.

Raman Scattering at Surfaces

Springer International Publishing AG, Vol. 45B, 2018, P. 597–654

Book series: Physics of Solid Surfaces

Type: Book contribution

ISBN: 978-3-662-53906-4

Yan L, Jiang H, Xing Y, Wang Y, Liu D, Gu X, Dai P, Li L, Zhao X.

Nickel metal–organic framework implanted on graphene and incubated to be ultrasmall nickel phosphide nanocrystals acts as a highly efficient water splitting electrocatalyst

Journal of Materials Chemistry A, Vol. 6, 2017, P. 1682–1691

Type: Journal article

DOI: /doi.org/10.1039/C7TA10218F

Skinner J, Wang S, Lee J, Ong C, Sommese R, Sivaramakrishnan S, Koelmel W, Hirschbeck M, Schindelin H, Kisker C, Lorenz K, Sosnick TR, Rosner MR.

A conserved salt bridge competition triggered by phosphorylation regulates the protein interactome

Proceedings of the National Academy of Sciences of the United States of America, Vol. 114, Nr. 51, 2017

Type: Journal article

DOI: /doi.org/10.1073/pnas.1711543114

Gonczarowska-Jorge H, Loroch S, Dell'Aica M, Sickmann A, Roos A, Zahedi RP.

Quantifying Missing (Phospho)Proteome Regions with the Broad-Specificity Protease Subtilisin

Analytical Chemistry, Vol. 89, Nr. 24, 2017, P. 13137–13145

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.7b02395

Filipek P, de Araujo M, Vogel G, De Smet C, Eberharter D, Rebsamen M, Rudashevskaya E, Kremser L, Yordanov T, Tschaikner P, Fürnrohr B, Lechner S, Dunzendorfer-Matt T, Scheffzek K, Bennett K, Superti-Furga G, Lindner H, Stasyk T, Huber L.

LAMTOR/Ragulator is a negative regulator of Arl8b- and BORC-dependent late endosomal positioning.

J Cell Biol, Vol. 216, Nr. 12, 2017, P. 4199–4215

Type: Journal article

DOI: /doi.org/10.1083/jcb.201703061

Vorlova S, Koch M, Manthey HD, Cochain C, Busch M, Chaudhari SM, Stegner D, Yepes M, Lorenz K, Nolte MW, Nieswandt B, Zernecke A.

Coagulation factor XII induces pro-inflammatory cytokine responses in macrophages and promotes atherosclerosis in mice

Thrombosis and Haemostasis, Vol. 117, Nr. 1, 2017, P. 176–187

Type: Journal article

DOI: /doi.org/10.1160/TH16-06-0466

Gajdošik Šrajer M, Andjelković U, Gašo-Sokač D, Pavlović H, Shevchuk O, Martinović T, Clifton J, Josić D.

Data set of proteomic analysis of food borne pathogens after treatment with the disinfectants based on pyridoxal oxime derivatives

Data in Brief, Vol. 15, 2017, P. 738–741

Type: Journal article

DOI: /doi.org/10.1016/j.dib.2017.09.060

Goel P, Jumpertz T, Mikles DC, Ticha A, Nguyen TNM, Verhelst SHL, Hubalek M, Johnson DC, Bachovchin DA, Ogorek I, Pietrzik CU, Strisovsky K, Schmidt B, Weggen S.

Discovery and biological evaluation of potent and selective N-methylene saccharin-derived inhibitors for rhomboid intramembrane proteases

Biochemistry, Vol. 56, Nr. 51, 2017, P. 6713–6725

Type: Journal article

DOI: /doi.org/10.1021/acs.biochem.7b01066

AL-DARAGHMEH TM, Saleh MH, Ahmad MJA, Bulos BN, Shehadeh KM, Abdul-Gader Jafar MM.

Electrical Transport Mechanisms and Photoconduction in Undoped Crystalline Flash-Evaporated Lead Iodide Thin Films

Journal of Electronic Materials, 2017

Type: Journal article

DOI: /doi.org/10.1007/s11664-017-5953-3

Jum'h I, Abdelhay A, Al-Taani H, Telfah A, Alnaief M, Rosiwal S.

Fabrication and application of boron doped diamond BDD electrode in olive mill wastewater treatment in Jordan

Journal of Water Reuse and Desalination, Vol. 7, Nr. 4, 2017, P. 502–510

Type: Journal article

DOI: /doi.org/10.2166/wrd.2016.062

Boutouja F, Brinkmeier R, Mastalski T, El Magraoui F, Platta HW.

Regulation of the Tumor-Suppressor BECLIN 1 by Distinct Ubiquitination Cascades.

Int J Mol Sci, Vol. 18, Nr. 12, 2017, P. 2541

Type: Journal article

DOI: /doi.org/10.3390/ijms18122541

Peng B, Weintraub ST, Coman C, Ponnaiyan S, Sharma R, Tews B, Winter D, Ahrends R.

A Comprehensive High-Resolution Targeted Workflow for the Deep Profiling of Sphingolipids

Analytical Chemistry, Vol. 89, Nr. 22, 2017, P. 12480–12487

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.7b03576

de Oliva Novo PJ, Dell'Aica M, Jender M, Höving S, Zahedi RP, Janasek D.

Integration of polycarbonate membranes in microfluidic free-flow electrophoresis

Analyst, Vol. 142, Nr. 22, 2017, P. 4228 – 4239

Type: Journal article

DOI: /doi.org/10.1039/C7AN01514C

Pauling JK, Hermansson M, Hartler J, Christiansen K, Gallego SF, Peng B, Ahrends R, Ejsing CS.

Proposal for a common nomenclature for fragment ions in mass spectra of lipids

PLOS One, Vol. 12, Nr. 11, 2017, P. e0188394

Type: Journal article

DOI: /doi.org/10.1371/journal.pone.0188394

El Magraoui F, Schmitz G, Meyer H.

Zirkulierende extrazelluläre Vesikel - die Biomarker der Zukunft?!

BIOspektrum, Vol. 23, Nr. 7, 2017, P. 777–778

Type: Journal article

DOI: /doi.org/10.1007/s12268-017-0872-7

Malchow S, Loosse C, Sickmann A, Lorenz C.

Quantification of Cardiovascular Disease Biomarkers in Human Platelets by Targeted Mass Spectrometry

Proteomes, Vol. 5, Nr. 4, 2017

Type: Journal article

DOI: /doi.org/10.3390/proteomes5040031

Della Mea GB, Matte LP, Thill AS, Lobato FO, Benvenutti EV, Arenas LT, Jürgensen A, Hergenröder R, Poletto FS, Bernardi F.

Tuning the oxygen vacancy population of cerium oxide (CeO2-x, 0 <x <0.5) nanoparticles

Applied Surface Science, Vol. 422, 2017, P. 1102–1112

Type: Journal article

DOI: /doi.org/10.1016/j.apsusc.2017.06.101

Kopczynski D, Sickmann A, Ahrends R.

Computational proteomics tools for identification and quality control

Journal of Biotechnology, Vol. 261, 2017, P. 126–130

Type: Journal article

DOI: /doi.org/10.1016/j.jbiotec.2017.06.1199

Rieder V, Schork KU, Kerschke L, Blank-Landeshammer B, Sickmann A, Rahnenführer J.

Comparison and Evaluation of Clustering Algorithms for Tandem Mass Spectra

Journal of Proteome Research, Vol. 16, Nr. 11, 2017, P. 4035–4044

Type: Journal article

DOI: /doi.org/10.1021/acs.jproteome.7b00427

Ticha A, Stanchev S, Vinothkumar KR, Mikles DC, Pachl P, Began J, Skerle J, Svehlova K, Nguyen TNM, Verhelst SHL, Johnson DC, Bachovchin DA, Lepsik M, Majer P, Strisovsky K.

A modular and generalizable route to potent, selective and pharmacologically compliant inhibitors of rhomboid proteases

Cell Chemical Biology, Vol. 24, Nr. 12, 2017, P. 1523–1536

Type: Journal article

DOI: /doi.org/10.1016/j.chembiol.2017.09.007

Hertwig A, Hinrichs K, Beck U, Esser N.

Editorial to the proceedings of the 7th conference on spectroscopic ellipsometry (ICSE-7)

Applied Surface Science, Vol. 421, 2017, P. 269–270

Type: Journal article

DOI: /doi.org/10.1016/j.apsusc.2017.04.081

de Oliva Novo PJ, Janasek D.

Current advances and challenges in microfluidic free-flow electrophoresisd-A critical review

Analytica Chimica Acta, Vol. 991, 2017, P. 9–29

Type: Journal article

DOI: /doi.org/10.1016/j.aca.2017.08.017