Publications

Hentschel A, Ahrends R.

Developing a Robust Assay to Monitor and Quantify Key Players of Metabolic Pathways during Adipogenesis by Targeted Proteomics

Proteomics, Vol. 20, Nr. 11, 2020

Type: Journal article

DOI: /doi.org/10.1002/pmic.201900141

Wang C, Börger V, Sardari M, Murke F, Skuljec J, Pul R, Hagemann N, Dzyubenko E, Dittrich R, Gregorius J, Hasenberg M, Kleinschnitz C, Popa-Wagner A, Doeppner TR, Gunzer M, Giebel B, Hermann DM.

Mesenchymal Stromal Cell-Derived Small Extracellular Vesicles Induce Ischemic Neuroprotection by Modulating Leukocytes and Specifically Neutrophils

Stroke, Vol. 51, Nr. 6, 2020, P. 1825–1834

Type: Journal article

DOI: /doi.org/10.1161/STROKEAHA.119.028012

Alsaad AM, Al-Bataineh QM, Ahmad AA, Albataineh Z, Telfah A.

Optical band gap and refractive index dispersion parameters of boron-doped ZnO thin films: A novel derived mathematical model from the experimental transmission spectra

Optik, Vol. 2020, Nr. 211, 2020, P. 164641–164654

Type: Journal article

DOI: /doi.org/10.1016/j.ijleo.2020.164641

AlKhalil M, Al-Hiari Y, Kasabri V, Arabiyat S, Al-Zweiri M, Mamdooh N, Telfah A.

Selected pharmacotherapy agents as antiproliferative and anti‐inflammatory compounds

Drug Development Research, Vol. 2020, Nr. 81, 2020, P. 470–490

Type: Journal article

DOI: /doi.org/10.1002/ddr.21640

Shpacovitch V, Hergenröder R.

Surface Plasmon Resonance (SPR)-Based Biosensors as Instruments with High Versatility and Sensitivity

Sensors, Vol. 20, Nr. 11, 2020

Type: Journal article

DOI: /doi.org/10.3390/s20113010

Gonzalez-Beltran AN, Masuzzo P, Ampe C, Bakker GJ, Besson S, Eibl RH, Friedl P, Gunzer M, Kittisopikul M, Dévédec SEL, Leo S, Moore J, Paran Y, Prilusky J, Rocca-Serra P, Besson, S, Roudot P, Schuster M, Sergeant G, Strömblad S, Swedlow JR, van Erp M, Van Troys M, Zaritsky A, Sansone SA, Martens L.

Community standards for open cell migration data

GigaScience, Vol. 9, Nr. 5, 2020

Type: Journal article

DOI: /doi.org/10.1093/gigascience/giaa041

Hinrichs K, Rappich J, Shaykhutdinov T.

Cover Picture: Field Manipulation of Infrared Absorption Properties

Physica Status Solidi B-Basic Solid State Physics, Vol. 257, Nr. 5, 2020, P. 2070022

Type: Journal article

DOI: /doi.org/10.1002/pssb.202070022

Hinrichs K, Rappich J, Shaykhutdinov T.

Field manipulation of infrared absorption properties in thin films

Physica Status Solidi (b), Vol. 257, Nr. 5, 2020

Type: Journal article

DOI: /doi.org/10.1002/pssb.201900490

Alsaad AM, Al-Bataineh QM, Qattan IA, Ahmad AA, Ababneh A, Albataineh Z, Aljarrah IA, Telfah A.

Measurement and ab initio Investigation of Structural, Electronic, Optical, and Mechanical Properties of Sputtered Aluminum Nitride Thin Films

Frontiers in Physics, Vol. 2020, Nr. 115, 2020

Type: Journal article

DOI: /doi.org/10.3389/fphy.2020.00115

Jender M, Novo P, Mähler D, Münchberg U, Janasek D, Freier E.

Multiplexed Online-Monitoring of Microfluidic Free-Flow Electrophoresis via Mass Spectrometry

Analytical Chemistry, Vol. 92, Nr. 9, 2020, P. 6764–6769

Type: Journal article

DOI: /doi.org/10.1021/acs.analchem.0c00996

Gajdošik Šrajer M, Andjelković U, Gašo-Sokač D, Pavlović H, Shevchuk O, Martinović T, Clifton J, Begić M, Josić D.

Proteomic analysis of pyridoxal oxime derivatives treated Listeria monocytogenes reveals down-regulation of the main virulence factor, Listeriolysin O

Food Research International, Vol. 131, 2020

Type: Journal article

DOI: /doi.org/10.1016/j.foodres.2019.108951

Peng B, Kopczynski D, Pratt B, Ejsing C, Burla B, Hermansson M, Benke PI, Tan SH, Chan MY, Torta F, Schwudke D, Meckelmann S, Coman C, Schmitz O, MacLean B, Manke M, Borst O, R. Wenk M, Hoffmann N, Ahrends R.

LipidCreator: A workbench to probe the lipidomic landscape

Nature Communications, Vol. 11, Nr. 1, 2020, P. 2057

Type: Journal article

DOI: /doi.org/10.1038/s41467-020-15960-z

van de Plassche MAT, O'Neill TJ, Seeholzer T, Turk B, Krappmann D, Verhelst SHL.

Use of Non-Natural Amino Acids for the Design and Synthesis of a Selective, Cell-Permeable MALT1 Activity-Based Probe

Journal of Medicinal Chemistry, Vol. 63, Nr. 8, 2020, P. 3996–4004

Type: Journal article

DOI: /doi.org/10.1021/acs.jmedchem.9b01879

Kopczynski D, Hoffmann N, Peng B, Ahrends R.

Goslin - A Grammar of Succinct Lipid Nomenclature

Cold Spring Harbor Laboratory Press, 2020

Book series: BioRxiv

Type: Book contribution

DOI: /doi.org/10.1101/2020.04.17.046656

Hinrichs K, Kratz C, Furchner A.

Hyperspectral mid-infrared ellipsometric measurements in the twinkling of an eye

Spectroscopy Europe, Vol. 2020, Nr. 32 (2), 2020, P. 10–14

Type: Journal article

DOI: /doi.org/https://www.spectroscopyeurope.com/article/hyperspectral-mid-infrared-ellipsometric-measurements-twinkling-eye

Tomasovic A, Brand T, Schanbacher C, Kramer S, Hümmert MW, Godoy P, Schmidt-Heck W, Nordbeck P, Ludwig J, Homann S, Wiegering A, Shaykhutdinov T, Kratz C, Knüchel R, Müller-Hermelink HK, Rosenwald A, Frey N, Eichler J, Dobrev D, El-Armouche A, Hengstler JG, Müller OJ, Hinrichs K, Cuello F, Zernecke A, Lorenz K.

Interference with ERK-dimerization at the nucleocytosolic interface targets pathological ERK1/2 signaling without cardiotoxic side-effects

Nature Communications, Vol. 11, Nr. 1, 2020

Type: Journal article

DOI: /doi.org/10.1038/s41467-020-15505-4

Braun C, Neufeld , Gerstmann U, Sanna S, Plaickner J, Speiser E, Esser N, Schmidt WG.

Vibration Driven Self-Doping of Dangling-Bond Wires on Si(553)-Au Surfaces

Physical Review Letters, Vol. 2020, Nr. 124, 2020

Type: Journal article

DOI: /doi.org/10.1103/PhysRevLett.124.146802

Grimmer J, Helm S, Dobritzsch D, Hause G, Shema G, Zahedi RP, Baginsky S.

Mild proteasomal stress improves photosynthetic performance in Arabidopsis chloroplasts

Nature Communications, Vol. 11, Nr. 1, 2020

Type: Journal article

DOI: /doi.org/10.1038/s41467-020-15539-8

Makepeace K, Mohammed Y, Rudashevskaya E, Petrotchenko E, Vögtle FN, Meisinger C, Sickmann A, Borchers C.

Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker

Molecular & Cellular Proteomics, Vol. 19, Nr. 4, 2020, P. 624–639

Type: Journal article

DOI: /doi.org/10.1074/mcp.RA119.001839

Barniol-Xicota M, Verhelst SHL.

Isolation of intramembrane proteases in membrane-like environments

Biochimica et biophysica acta-Biomembranes, Vol. 1862, Nr. 4, 2020

Type: Journal article

DOI: /doi.org/10.1016/j.bbamem.2020.183193

Duscha A, Gisevius B, Hirschberg S, Yissachar N, Stangl GI, Eilers E, Bader V, Haase S, Kaisler J, David C, Schneider R, Troisi R, Zent D, Hegelmaier T, Dokalis N, Gerstein S, Del Mare-Roumani S, Amidror S, Staszewski O, Poschmann G, Stühler K, Hirche F, Balogh A, Kempa S, Träger P, Zaiss MM, Holm JB, Massa MG, Nielsen HB, Faissner A, Lukas C, Gatermann SG, Scholz M, Przuntek H, Prinz M, Forslund SK, Winklhofer KF, Müller DN, Linker RA, Haghikia A.

Propionic Acid Shapes the Multiple Sclerosis Disease Course by an Immunomodulatory Mechanism

Cell, Vol. 180, Nr. 6, 2020, P. 1067–1080.e16

Type: Journal article

DOI: /doi.org/10.1016/j.cell.2020.02.035

Xuan Y, Bateman NW, Gallien S, Goetze S, Zhou Y, Navarro P, Hu M, Parikh N, Hood BL, Conrads KA, Looße C, Birhanu Kitata R, Piersma SR, Chiasserini D, Zhu H, Hou G, Tahir M, Macklin A, Khoo A, Sun X, Crossett B, Sickmann A, Chen YJ, Jimenez CR, Zhou H, Liu S, Larsen MR, Kislinger T, Chen Z, Parker BL, Cordwell SJ, Wollscheid B, Conrads TP.

Standardization and Harmonization of Distributed Multi-National Proteotype Analysis supporting Precision Medicine Studies

Nature Communications, 2020, P. 2020.03.12.988089

Type: Journal article

DOI: /doi.org/10.1101/2020.03.12.988089

von Bohlen A, Fernández-Ruiz R.

Experimental evidence of matrix effects in total-reflection X-ray fluorescence analysis: Coke case

Talanta, Vol. 209, Nr. 209, 2020

Type: Journal article

DOI: /doi.org/10.1016/j.talanta.2019.120562

Ueki H, Wang IH, Zhao D, Gunzer M, Kawaoka Y.

Multicolor two-photon imaging of in vivo cellular pathophysiology upon influenza virus infection using the two-photon IMPRESS

Nature protocols, Vol. 15, Nr. 3, 2020, P. 1041–1065

Type: Journal article

DOI: /doi.org/10.1038/s41596-019-0275-y

Töpf A, Oktay Y, Balaraju S, Yilmaz E, Sonmezler E, Yis U, Laurie S, Thompson R, Roos A, MacArthur DG, Yaramis A, Gungor S, Lochmüller H, Hiz S, Horvath R.

Severe neurodevelopmental disease caused by a homozygous TLK2 variant

European journal of human genetics, Vol. 28, Nr. 3, 2020, P. 383–387

Type: Journal article

DOI: /doi.org/10.1038/s41431-019-0519-x

Czech-Sioli M, Siebels S, Radau S, Zahedi RP, Schmidt C, Dobner T, Grundhoff A, Fischer N.

The Ubiquitin-Specific Protease Usp7, a Novel Merkel Cell Polyomavirus Large T-Antigen Interaction Partner, Modulates Viral DNA Replication

Journal of Virology, Vol. 94, Nr. 5, 2020

Type: Journal article

DOI: /doi.org/10.1128/JVI.01638-19

Plaickner J, Esser N, Halbig B, Geurts J, Schmidt WG, Sanna S.

Vibrational Raman spectroscopy on adsorbate-induced low-dimensional surface structures

Surface Science Reports, Vol. 75, Nr. 1, 2020

Type: Journal article

DOI: /doi.org/10.1016/j.surfrep.2020.100480

Camparini L, Kollipara L, Sinagra G, Loffredo FS, Sickmann A, Shevchuk O.

Targeted Approach to Distinguish and Determine Absolute Levels of GDF8 and GDF11 in Mouse Serum

Proteomics, Vol. 20, Nr. 11, 2020, P. e1900104

Type: Journal article

DOI: /doi.org/10.1002/pmic.201900104

Amich J, Mokhtari Z, Strobel M, Vialetto E, Sheta D, Yu Y, Hartweg J, Kalleda N, Jarick KJ, Brede C, Jordán-Garrote AL, Thusek S, Schmiedgen K, Arslan B, Pinnecker J, Thornton CR, Gunzer M, Krappmann S, Einsele H, Heinze KG, Beilhack A.

Three-Dimensional Light Sheet Fluorescence Microscopy of Lungs To Dissect Local Host Immune-Aspergillus fumigatus interactions

mBio, Vol. 11, Nr. 1, 2020, P. e02752–19

Type: Journal article

DOI: /doi.org/10.1128/mBio.02752-19

van Veen S, Martin S, Van den Haute C, Benoy V, Lyons J, Vanhoutte R, Kahler JP, Decuypere JP, Gelders G, Lambie E, Zielich J, Swinnen JV, Annaert W, Agostinis P, Ghesquiere B, Verhelst SHL, Baekelandt V, Eggermont J, Vangheluwe P.

ATP13A2 deficiency disrupts lysosomal polyamine export

Nature, Vol. 578, Nr. 7795, 2020, P. 419–424

Type: Journal article

DOI: /doi.org/10.1038/s41586-020-1968-7

Kumm EJ, Pagel O, Gambaryan S, Walter U, Zahedi RP, Smolenski A, Jurk K.

The Cell Cycle Checkpoint System MAST(L)-ENSA/ARPP19-PP2A is Targeted by cAMP/PKA and cGMP/PKG in Anucleate Human Platelets

Cells, Vol. 9, Nr. 2, 2020

Type: Journal article

DOI: /doi.org/10.3390/cells9020472

Knodel A, Marggraf U, Ahlmann N, Brandt S, Foest D, Gilbert López B, Franzke J.

Standardization of Sandwich-Structured Cu–Glass Substrates Embedded in a Flexible Diode Laser–Plasma Interface for the Detection of Cholesterol

Analytical Chemistry, 2020

Type: Journal article

Jender M, Novo P, Mähler D, Münchberg U, Janasek D, Freier E.

Multiplexed Online-Monitoring of Microfluidic Free-Flow Electrophoresis via Mass Spectrometry

ChemRxiv, 2020

Type: Journal article

DOI: /doi.org/10.26434/chemrxiv.11848422.v1

Li H, Münchberg U, Oughli AA, Buesen D, Lubitz W, Freier E, Plumeré N.

Suppressing hydrogen peroxide generation to achieve oxygen-insensitivity of a [NiFe] hydrogenase in redox active films

Nature Communications, Vol. 11, Nr. 1, 2020, P. 920

Type: Journal article

DOI: /doi.org/10.1038/s41467-020-14673-7

Plaickner J, Speiser E, Chandola S, Esser N, Singh DK.

Adsorption of toluene-3,4-dithiol on silver islands investigated by surface-enhanced Raman spectroscopy

Journal of Raman Spectroscopy, 2020

Type: Journal article

Hoffmann N, Kopczynski D, Al Machot F, Miranda Ackermann J, Sickmann A, Schwudke D, Shevchenko A, Ahrends R.

Lipidomik: wie Lipide die Blutgerinnung steuern

2020

Book series: de.NBI Use Case Broschüre 2020

Type: Book contribution

Soni H, Bode J, Nguyen DLC, Puccio L, Nessling M, Piro RM, Bub J, Phillips E, Ahrends R, Eipper BA, Tews B, Goidts V.

PERK-mediated expression of peptidylglycine alpha-amidating monooxygenase supports angiogenesis in glioblastoma

Oncogenesis, Vol. 9, Nr. 2, 2020, P. 18

Type: Journal article

DOI: /doi.org/10.1038/s41389-020-0201-8

Asheghali D, Lee SJ, Furchner A, Gruzd A, Larson S, Tokarev A, Stake S, Zhou X, Hinrichs K, Zhang LG, Minko S.

Enhanced neuronal differentiation of neural stem cells with mechanically enhanced touch-spun nanofibrous scaffolds

Nanomedicine: Nanotechnology, Biology and Medicine, Vol. 24, 2020

Type: Journal article

DOI: /doi.org/10.1016/j.nano.2020.102152

Märker R, Blank-Landeshammer B, Beier-Rosberger A, Sickmann A, Kück U.

Phosphoproteomic analysis of STRIPAK mutants identifies a conserved serine phosphorylation site in PAK kinase CLA4 to be important in fungal sexual development and polarized growth

Molecular Microbiology, Vol. 113, Nr. 6, 2020, P. 1053–1069

Type: Journal article

DOI: /doi.org/doi: 10.1111/mmi.14475

Vautz W.

Die Ionenmobilitätsspektrometrie – eine immer noch unterschätzte analytische Technik

GIT Labor-Fachzeitschrift, 2020

Type: Journal article

Muscolino E, Schmitz R, Loroch S, Caragliano E, Schneider C, Rizzato M, Kim Y, Krause E, Lisnić VJ, Sickmann A, Reimer R, Ostermann E, Brune W.

Herpesviruses Induce Aggregation and Selective Autophagy of Host Signalling Proteins NEMO and RIPK1 as an Immune-Evasion Mechanism

Nature Microbiology, Vol. 5, Nr. 2, 2020, P. 331–342

Type: Journal article

DOI: /doi.org/10.1038/s41564-019-0624-1

Schleier L, Wiendl M, Heidbreder K, Binder MT, Atreya R, Rath T, Becker E, Schulz-Kuhnt A, Stahl A, Schulze LL, Ullrich K, Merz SF, Bornemann L, Gunzer M, Watson AJM, Neufert C, Atreya I, Neurath MF, Zundler S.

Non-classical monocyte homing to the gut via α4β7 integrin mediates macrophage-dependent intestinal wound healing

Gut, Vol. 69, Nr. 2, 2020, P. 252–263

Type: Journal article

DOI: /doi.org/10.1136/gutjnl-2018-316772

Al-Ma’ani A, Al-Hiari Y, Kasabri V, Mamdooh N, Alalawi S, Telfah A.

Functionalised Triazoloquinolones as a Potentially Novel Class of Antidiabesity and Antiproliferative compounds: Synthesis and Pharmacological Appraisal

Analytical Chemistry Letter, Vol. 9, Nr. 6, 2020, P. 727–746

Type: Journal article

DOI: /doi.org/10.1080/22297928.2019.1699857

Furchner A, Kratz C, Ogieglo W, Pinnau I, Rappich J, Hinrichs K.

Ultrasensitive broadband infrared 4 × 4 Mueller-matrix ellipsometry for studies of depolarizing and anisotropic thin films

Journal of Vacuum Science & Technology B, Vol. 38, Nr. 1, 2020, P. 014003

Type: Journal article

DOI: /doi.org/10.1116/1.5129800

Bandeira N, Barsnes H, Colon F, Deutsch E, Elias J, Gundry R, Hao S, Hoffmann N, Kennedy M, Kunath B, Martens L, Salz R, Sizochenko N, Vandenbrouck Y, Vitek O, Antonio Vizcaino J, Wollscheid B.

Working Group Report: Public Proteomics Data

Dagstuhl Reports, Vol. 9, 2019, P. 70–83

Book series: Computational Proteomics (Dagstuhl Seminar 19351)

Type: Book contribution

DOI: /doi.org/10.4230/DagRep.9.8.70

Vautz W, Seifert L, Mohammadi M, Klinkenberg I, Liedtke S.

Detection of axillary perspiration metabolites using ion mobility spectrometry coupled to rapid gas-chromatography

Analytical and Bioanalytical Chemistry, 2019, P. 1–10

Type: Journal article

Knorrscheidt A, Püllmann P, Schell E, Homann D, Freier E, Weissenborn M.

Development of 96 Multiple Injection-GC-MS Technique and Its Application in Protein Engineering of Natural and Non-Natural Enzymatic Reactions

ChemRxiv, 2019

Type: Journal article

DOI: /doi.org/10.26434/chemrxiv.10314239.v1

Maimari T, Krasel C, Bünemann M, Lorenz K.

The N-termini of GRK2 and GRK3 simulate the stimulating effects of RKIP on β-adrenoceptors

Biochemical and Biophysical Research Communications, Vol. 520, Nr. 2, 2019, P. 327–332

Type: Journal article

DOI: /doi.org/10.1016/j.bbrc.2019.09.135

Weingärtner O, Lütjohann D, Meyer S, Fuhrmann A, Cremers B, Seiler-Mußler S, Schött HF, Kerksiek A, Friedrichs S, Ulbricht U, Zawada AM, Laufs U, Schulze PC, Scheller B, Fliser D, Böhm M, Sijbrands E, Heine GH.

Low serum lathosterol levels associate with fatal cardiovascular disease and excess all-cause mortality:

Clinical research in Cardiology, Vol. 108, Nr. 12, 2019, P. 1381–1385

Type: Journal article

DOI: /doi.org/10.1007/s00392-019-01474-2

Blank-Landeshammer B, Richard VR, Mitsa G, Marques M, LeBlanc A, Kollipara L, Feldmann I, Couetoux du Tertre M, Gambaro K, McNamara S, Spatz A, Zahedi RP, Sickmann A, Batist G, Borchers C.

Proteogenomics of Colorectal Cancer Liver Metastases

Cancers, Vol. 11, Nr. 12, 2019

Type: Journal article

DOI: /doi.org/10.3390/cancers11121907