Dr. Nils Hoffmann

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Nils Hoffmann

Research Associate

  • Lipidomics

Employment

Research Associate

Lipidomics

Leibniz-Institut für Analytische Wissenschaften

Dortmund, Germany

01.06.2017 → present

Research interests

Bioinformatics for Lipidomics

  • Standardization of reporting for mass spectrometry data from lipidomics experiments
  • Standardization of lipid nomenclature, taxonomies and ontologies for lipids
  • LIFS web portal
  • Reference database for quantitative lipidomics data - LipidCompass

Research Output

Towards better data standards and workflow interoperability in metabolomics and lipidomics.

Hoffmann, N., 09.10.2019, Proceedings of Munich Metabomics Meeting.

Data Standardization and Exchange for Metabolomics and Lipidomics - the mzTab-M format and its reference implementation

Hoffmann, N., Hartler, J. & Ahrends, R., 19.09.2019, Proceedings of the International Symposium on Integrative Bioinformatics.

A workbench to probe the lipidomic landscape

Peng, B., Kopczynski, D., Pratt, B., Ejsing, C. S., Hermansson, M., Schwudke, D., Meckelmann, S., Schmitz, O., MacLean, B., Borst, O., Hoffmann, N. & Ahrends, R., 21.06.2019, ICBL.

mzTab-M: a data standard for sharing quantitative results in mass spectrometry metabolomics

Hoffmann, N., Rein, J., Sachsenberg, T., Hartler, J., Haug, K., Mayer, G., Alka, O., Dayalan, S., Pierce, J. TM., Rocca-Serra, P., Qi, D., Eisenacher, M., Perez-Riverol, Y., Antonio Vizcaino, J., Salek, R., Neumann, S. & Jones, A. R., 28.01.2019, In : Analytical Chemistry. 91, 5, p. 3302-3310 9 p.

Identification of key lipids critical for platelet activation by comprehensive analysis of the platelet lipidome

Peng, B., Geue, S., Coman, C., Münzer, P., Kopczynski, D., Has, C., Hoffmann, N., Manke, M-C., Lang, F., Sickmann, A., Gawaz, M., Borst, O. & Ahrends, R., 21.05.2018, In : Blood. 132, 5, p. e1-e12

Lipidomics informatics for life-science

Schwudke, D., Shevchenko, A., Hoffmann, N. & Ahrends, R., 16.08.2017, In : Journal of Biotechnology. 261, p. 131-136 6 p.

Presentations / Teaching / Workshops

Quantitative Lipidomics - LipidCreator and Skyline for targeted lipidomics

Hoffmann, N. & Peng, B., 10.03.2019, LipoSysMed Proceedings.

DATA CONVERSION INTEROPERABILITY & EXCHANGE - MZTAB

Hoffmann, N., 11.11.2018, Lipidomics Forum 2018 - Workshop 2 on Hands-On Workshop on Lipidomics Software and Pipelines.

Activities

Summer school on Integration of Large Scale Lipidomics Data in Systems Medicine Research

Nils Hoffmann (Invited Speaker)
18.03.2019 → 22.03.2019

Summer school on Integration of Large Scale Lipidomics Data in Systems Medicine Research

Nils Hoffmann (Organiser)
18.03.2019 → 22.03.2019

52nd Annual Meeting of the German Society for Mass Spectrometry

Nils Hoffmann (Organiser)
10.03.2019

4th Lipidomics Forum

Nils Hoffmann (Organiser)
11.11.2018

4th Lipidomics Forum

Nils Hoffmann (Organiser)
11.11.2018 → 13.11.2018

3rd Lipidomics Forum

Nils Hoffmann (Organiser)
12.11.2017