Dr. Nils Hoffmann

Image removed.

Nils Hoffmann

Research Associate

  • Lipidomics

Employment

Research Associate

Lipidomics

Leibniz-Institut für Analytische Wissenschaften

Dortmund, Germany

01.06.2017 → present

Research interests

Bioinformatics for Lipidomics

  • Standardization of reporting for mass spectrometry data from lipidomics experiments
  • Standardization of lipid nomenclature, taxonomies and ontologies for lipids
  • LIFS web portal
  • Reference database for quantitative lipidomics data - LipidCompass

Research Output

Goslin - A Grammar of Succinct Lipid Nomenclature

Kopczynski, D., Hoffmann, N., Peng, B. & Ahrends, R., 18.08.2020, In : Analytical Chemistry. 92, 16, p. 10957-10960 4 p.

LipidCreator: A workbench to probe the lipidomic landscape

Peng, B., Kopczynski, D., Pratt, B., Ejsing, C., Burla, B., Hermansson, M., Benke, P. I., Tan, S. H., Chan, M. Y., Torta, F., Schwudke, D., Meckelmann, S., Coman, C., Schmitz, O., MacLean, B., Manke, MC., Borst, O., R. Wenk, M., Hoffmann, N. & Ahrends, R., 28.04.2020, In : Nature Communications. 11, 1, p. 2057 14 p., 2057.

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR

Wibberg, D., Batut, B., Belmann, P., Blom, J., Glöckner, F. O., Hoffmann, N., Grüning, B., Kleinbölting, N., Rahn, R., Rey, M., Scholz, U., Sharan, M., Tauch, A., Trojahn, U., Usadel, B. & Kohlbacher, O., 07.11.2019, In : F1000 Research. 8, p. 1877 8.

JmzTab-M - A reference parser, writer and validator for the PSI mzTab 2.0 metabolomics standard

Hoffmann, N., Hartler, J. & Ahrends, R., 15.10.2019, In : Analytical Chemistry. 91, 20, p. 12615-12618 4 p.

The metaRbolomics toolbox in Bioconductor and beyond

Stanstrup, J., Broeckling, C. D., Helmus, R., Hoffmann, N., Mathé, E., Naake, T., Nicolotti, L., Peters, K., Rainer, J., Salek, R., Schulze, T., Schymanski, E., Stravs, M. A., Thevenot, E., Treutler, H., Weber, R. J. M., Willighagen, E., Witting, M. & Neumann, S., 01.10.2019, In : Metabolites. 9, 10, 55 p., 200.

mzTab-M: a data standard for sharing quantitative results in mass spectrometry metabolomics

Hoffmann, N., Rein, J., Sachsenberg, T., Hartler, J., Haug, K., Mayer, G., Alka, O., Dayalan, S., Pierce, J. TM., Rocca-Serra, P., Qi, D., Eisenacher, M., Perez-Riverol, Y., Antonio Vizcaino, J., Salek, R., Neumann, S. & Jones, A. R., 05.03.2019, In : Analytical Chemistry. 91, 5, p. 3302-3310 9 p.

Identification of key lipids critical for platelet activation by comprehensive analysis of the platelet lipidome

Peng, B., Geue, S., Coman, C., Münzer, P., Kopczynski, D., Has, C., Hoffmann, N., Manke, M-C., Lang, F., Sickmann, A., Gawaz, M., Borst, O. & Ahrends, R., 21.05.2018, In : Blood. 132, 5, p. e1-e12

Lipidomics informatics for life-science

Schwudke, D., Shevchenko, A., Hoffmann, N. & Ahrends, R., 16.08.2017, In : Journal of Biotechnology. 261, p. 131-136 6 p.

Presentations / Teaching / Workshops

Quantitative Lipidomics - LipidCreator and Skyline for targeted lipidomics

Hoffmann, N. & Peng, B., 10.03.2019, LipoSysMed Proceedings.

Research Output: ISAS- Contribution to book/anthology › Conference contribution - Presentation / Talk › Education

DATA CONVERSION INTEROPERABILITY & EXCHANGE - MZTAB

Hoffmann, N., 11.11.2018, Lipidomics Forum 2018 - Workshop 2 on Hands-On Workshop on Lipidomics Software and Pipelines.

Research Output: ISAS- Contribution to book/anthology › Conference contribution - Presentation / Talk › Education

Activities

Joint 8th European Lipidomics Meeting & 6th Lipidomics Forum

Nils Hoffmann (Organiser)

02.10.2020

Joint 8th European Lipidomics Meeting & 6th Lipidomics Forum

Nils Hoffmann (Organiser)

01.10.2020

Data Standardization and Tools for Lipidomics

Nils Hoffmann (Lecturer)

14.05.2020

TOWARDS BETTER DATA STANDARDS AND WORKFLOW INTEROPERABILITY IN METABOLOMICS AND LIPIDOMICS WITHIN THE de.NBI LIFS PROJECT AND BEYOND

Nils Hoffmann (Lecturer)

20.04.2020

5th Lipidomics Forum

Nils Hoffmann (Organiser)

10.11.2019 → 12.11.2019

Summer school on Integration of Large Scale Lipidomics Data in Systems Medicine Research

Nils Hoffmann (Invited Speaker)

18.03.2019 → 22.03.2019

Summer school on Integration of Large Scale Lipidomics Data in Systems Medicine Research

Nils Hoffmann (Organiser)

18.03.2019 → 22.03.2019

52nd Annual Meeting of the German Society for Mass Spectrometry

Nils Hoffmann (Organiser)

10.03.2019

4th Lipidomics Forum

Nils Hoffmann (Organiser)

11.11.2018

4th Lipidomics Forum

Nils Hoffmann (Organiser)

11.11.2018 → 13.11.2018

3rd Lipidomics Forum

Nils Hoffmann (Organiser)

12.11.2017